Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 2.9e-91 338.6 172 100.0
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.7e-27 126.7 189 46.0
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 1.9e-23 113.2 182 46.2
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 1.5e-20 103.6 169 43.2
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 2.6e-20 102.8 174 43.7
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 5.9e-20 101.7 174 43.1
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 7.7e-20 101.3 196 42.9
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 2.2e-19 99.8 175 45.1
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 3.8e-19 99.0 169 43.2
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.1e-18 97.4 167 39.5
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 1.4e-18 97.1 170 43.5
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 4.2e-18 95.5 171 42.1
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 5.5e-18 95.1 186 40.9
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 7.2e-18 94.7 157 43.3
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 7.2e-18 94.7 171 42.1
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 9.4e-18 94.4 170 42.9
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 1.2e-17 94.0 157 45.2
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 1.2e-17 94.0 172 41.9
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.6e-17 93.6 207 42.0
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 1.6e-17 93.6 173 43.9
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 2.1e-17 93.2 169 40.8
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 2.7e-17 92.8 175 42.9
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 3.6e-17 92.4 179 41.3
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 7.9e-17 91.3 171 40.9
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 1.4e-16 90.5 172 39.5
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 2.3e-16 89.7 181 40.9
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 2.3e-16 89.7 177 42.9
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.0e-16 89.4 174 42.5
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 3.0e-16 89.4 157 40.8
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 3.9e-16 89.0 159 43.4
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 6.7e-16 88.2 178 41.0
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 6.7e-16 88.2 175 42.3
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 8.8e-16 87.8 189 40.7
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.5e-15 87.0 181 39.2
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.5e-15 87.0 181 39.2
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 1.5e-15 87.0 161 39.1
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 2.0e-15 86.7 185 36.8
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 2.6e-15 86.3 188 38.8
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 5.7e-15 85.1 173 39.3
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 2.2e-14 83.2 174 40.2
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 2.2e-14 83.2 175 40.0
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 2.8e-14 82.8 184 39.1
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 3.7e-14 82.4 184 38.0
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 4.8e-14 82.0 180 37.8
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 4.8e-14 82.0 174 40.8
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 6.3e-14 81.6 184 35.9
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 8.2e-14 81.3 180 37.8
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 8.2e-14 81.3 180 37.8
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 8.2e-14 81.3 170 36.5
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.4e-13 80.5 175 38.9
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 1.4e-13 80.5 179 37.4
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 1.4e-13 80.5 173 37.0
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.4e-13 80.5 176 38.1
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 1.8e-13 80.1 186 37.6
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 4.1e-13 79.0 184 35.9
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 5.3e-13 78.6 185 36.2
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 9.1e-13 77.8 153 43.1
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.2e-12 77.4 141 42.6
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 2.6e-12 76.3 175 36.0
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 3.4e-12 75.9 184 35.3
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 4.5e-12 75.5 167 40.1
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 1.0e-11 74.3 168 36.9
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 2.2e-11 73.2 134 40.3
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 2.2e-11 73.2 171 38.0
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.9e-11 72.8 183 35.0
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 3.8e-11 72.4 167 39.5
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 3.8e-11 72.4 181 39.2
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 6.5e-11 71.6 178 34.8
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.1e-10 70.9 178 37.1
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 1.1e-10 70.9 152 40.1
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 1.4e-10 70.5 172 36.6
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 1.4e-10 70.5 179 34.6
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 2.5e-10 69.7 173 36.4
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 2.5e-10 69.7 172 38.4
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.2e-10 69.3 148 39.9
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 3.2e-10 69.3 170 38.2
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 5.5e-10 68.6 164 35.4
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 5.5e-10 68.6 153 37.3
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 7.2e-10 68.2 194 35.6
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 9.4e-10 67.8 170 38.2
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 9.4e-10 67.8 191 34.6
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.2e-09 67.4 173 32.4
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 4.7e-09 65.5 191 34.0
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 8.0e-09 64.7 151 37.7
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 8.0e-09 64.7 168 34.5
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 8.0e-09 64.7 148 38.5
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.0e-08 64.3 171 36.3
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 1.0e-08 64.3 179 34.6
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 1.0e-08 64.3 194 32.0
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 1.4e-08 63.9 142 35.9
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 1.8e-08 63.5 171 35.7
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 1.8e-08 63.5 193 34.7
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 2.3e-08 63.2 151 35.8
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 2.3e-08 63.2 169 36.7
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.0e-08 62.8 176 36.9
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.0e-08 62.8 171 33.9
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 5.2e-08 62.0 142 33.1
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 5.2e-08 62.0 175 34.3
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 6.7e-08 61.6 176 34.1
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 8.8e-08 61.2 181 34.8
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 1.1e-07 60.8 172 34.3
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.1e-07 60.8 168 34.5
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.1e-07 60.8 168 34.5
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 2.0e-07 60.1 183 33.3
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 2.6e-07 59.7 181 33.1
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 2.6e-07 59.7 103 41.7
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 2.6e-07 59.7 169 33.7
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 5.7e-07 58.5 181 32.6
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 7.4e-07 58.2 194 36.1
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 9.7e-07 57.8 150 35.3
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.3e-06 57.4 134 34.3
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 2.2e-06 56.6 172 34.3
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 2.2e-06 56.6 172 34.3
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 2.8e-06 56.2 166 30.1


User provided reference genes

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