Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.7e-86 322.0 169 100.0
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.5e-39 166.8 164 59.8
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 3.0e-37 159.1 161 57.1
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.0e-37 158.7 176 54.0
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 8.9e-37 157.5 169 54.4
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.5e-36 156.8 165 55.2
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.6e-36 156.0 176 51.7
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 9.8e-36 154.1 168 54.8
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.7e-35 153.3 165 55.8
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 2.8e-35 152.5 165 54.5
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.9e-35 151.8 168 54.8
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.4e-34 150.2 170 55.9
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 5.4e-34 148.3 176 52.3
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 7.0e-34 147.9 163 54.6
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.2e-33 147.1 172 52.9
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 1.6e-33 146.7 167 52.7
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.0e-33 146.4 168 51.2
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 2.7e-33 146.0 168 49.4
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 3.5e-33 145.6 168 48.8
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 5.9e-33 144.8 169 51.5
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 7.8e-33 144.4 172 50.0
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.3e-32 143.7 170 52.4
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 1.7e-32 143.3 177 48.0
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.3e-32 142.9 163 53.4
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 3.9e-32 142.1 180 51.7
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 3.9e-32 142.1 184 50.5
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 6.6e-32 141.4 162 53.7
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 6.6e-32 141.4 164 51.2
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 6.6e-32 141.4 174 51.1
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.9e-31 139.8 161 52.2
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.9e-31 139.8 175 49.7
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 4.3e-31 138.7 174 51.1
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 4.3e-31 138.7 168 51.8
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 5.6e-31 138.3 170 53.5
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.2e-30 137.1 172 51.2
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 2.1e-30 136.3 167 52.7
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 2.8e-30 136.0 174 50.6
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 3.6e-30 135.6 171 49.7
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 6.1e-30 134.8 159 50.9
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 6.1e-30 134.8 171 49.1
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 8.0e-30 134.4 159 52.2
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 8.0e-30 134.4 172 50.6
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 8.0e-30 134.4 164 48.2
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.8e-29 133.3 159 52.2
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.8e-29 133.3 167 48.5
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 3.1e-29 132.5 167 49.1
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 5.2e-29 131.7 172 47.7
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 5.2e-29 131.7 164 47.6
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 6.8e-29 131.3 164 46.3
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 6.8e-29 131.3 164 46.3
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 6.8e-29 131.3 166 48.8
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 6.8e-29 131.3 171 46.8
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 8.9e-29 131.0 158 51.3
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 8.9e-29 131.0 160 48.8
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 8.9e-29 131.0 164 47.6
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 1.2e-28 130.6 169 47.9
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.5e-28 130.2 166 46.4
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 2.0e-28 129.8 177 46.9
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 2.0e-28 129.8 164 47.6
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 2.0e-28 129.8 164 47.0
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 2.6e-28 129.4 165 47.3
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 3.4e-28 129.0 162 46.3
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 3.4e-28 129.0 172 48.3
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 3.4e-28 129.0 164 47.0
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.4e-28 129.0 168 47.0
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 5.8e-28 128.3 164 48.2
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 5.8e-28 128.3 172 48.8
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 5.8e-28 128.3 168 48.2
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 7.5e-28 127.9 164 47.0
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 9.8e-28 127.5 172 47.7
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 9.8e-28 127.5 166 46.4
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 9.8e-28 127.5 172 48.3
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 2.2e-27 126.3 161 46.0
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 2.2e-27 126.3 161 46.0
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 2.9e-27 125.9 165 46.1
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 2.9e-27 125.9 167 47.3
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 2.9e-27 125.9 165 44.2
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.7e-27 125.6 172 47.7
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 3.7e-27 125.6 165 47.3
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.9e-27 125.2 172 46.5
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 4.9e-27 125.2 170 50.0
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 4.9e-27 125.2 176 47.7
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.4e-26 123.6 165 46.1
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 1.9e-26 123.2 160 46.2
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.9e-26 123.2 160 46.2
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.9e-26 123.2 165 47.3
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 3.2e-26 122.5 141 54.6
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 4.1e-26 122.1 163 44.2
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 4.1e-26 122.1 178 42.7
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 5.4e-26 121.7 170 47.1
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 7.0e-26 121.3 170 48.8
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 9.2e-26 120.9 158 44.9
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 9.2e-26 120.9 166 47.0
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 1.2e-25 120.6 159 48.4
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 1.6e-25 120.2 160 46.9
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 2.7e-25 119.4 165 46.7
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 3.5e-25 119.0 185 42.7
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 3.0e-24 115.9 170 44.7
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 5.0e-24 115.2 165 44.8
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 6.6e-24 114.8 150 50.0
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 1.1e-23 114.0 166 44.6
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 5.6e-23 111.7 173 43.9
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 2.1e-22 109.8 164 42.7
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.8e-22 109.4 181 40.9
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 8.0e-22 107.8 170 44.7
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 3.1e-21 105.9 170 43.5
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 5.2e-21 105.1 139 52.5
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 6.8e-21 104.8 214 38.3
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 4.9e-19 98.6 163 41.1
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 1.7e-16 90.1 76 56.6
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 5.6e-15 85.1 85 52.9
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 5.2e-13 78.6 132 40.2
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 6.8e-13 78.2 255 30.6
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 7.5e-12 74.7 76 53.9
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 1.7e-08 63.5 42 71.4
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.7e-08 63.5 102 43.1
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 4.3e-07 58.9 179 30.7
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 7.3e-07 58.2 124 37.1


User provided reference genes

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