Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.6e-65 252.7 130 100.0
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.7e-19 99.8 178 43.3
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 3.2e-18 95.5 182 41.8
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 1.6e-17 93.2 200 39.5
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.1e-17 92.8 177 40.1
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 4.6e-17 91.7 178 39.9
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 4.6e-17 91.7 199 38.2
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 4.6e-17 91.7 199 38.2
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 6.0e-17 91.3 194 39.7
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 7.8e-17 90.9 190 40.0
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 7.8e-17 90.9 176 41.5
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.3e-16 90.1 195 39.0
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.3e-16 89.4 191 38.7
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.3e-16 89.4 191 38.7
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 2.3e-16 89.4 204 36.3
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 3.0e-16 89.0 191 39.3
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 3.0e-16 89.0 173 41.0
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.0e-16 89.0 194 40.7
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 3.9e-16 88.6 163 39.9
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 5.1e-16 88.2 198 39.4
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.1e-16 88.2 193 38.3
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.1e-16 88.2 193 39.9
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.1e-16 88.2 165 40.6
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 5.1e-16 88.2 167 41.9
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 6.6e-16 87.8 200 40.0
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.6e-16 87.8 191 38.2
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 8.7e-16 87.4 199 39.7
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 1.1e-15 87.0 184 40.8
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 1.1e-15 87.0 181 39.8
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 1.1e-15 87.0 181 39.8
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 1.5e-15 86.7 189 39.7
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 1.5e-15 86.7 205 37.1
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 1.9e-15 86.3 198 36.9
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 2.5e-15 85.9 192 35.4
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 4.3e-15 85.1 143 43.4
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 5.6e-15 84.7 155 42.6
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 5.6e-15 84.7 160 41.2
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 5.6e-15 84.7 191 38.2
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 7.3e-15 84.3 197 39.1
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 9.6e-15 84.0 196 40.3
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 9.6e-15 84.0 183 38.3
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 1.3e-14 83.6 180 38.3
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.3e-14 83.6 208 38.0
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.3e-14 83.6 155 43.9
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.6e-14 83.2 165 39.4
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.6e-14 83.2 174 39.7
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.1e-14 82.8 205 37.1
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 8.1e-14 80.9 203 36.0
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 8.1e-14 80.9 187 36.4
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 8.1e-14 80.9 163 36.8
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 1.1e-13 80.5 215 34.4
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 1.1e-13 80.5 167 40.1
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 1.8e-13 79.7 173 36.4
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.4e-13 79.3 179 37.4
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 3.1e-13 79.0 206 35.4
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 3.1e-13 79.0 185 38.9
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 3.1e-13 79.0 173 37.6
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 4.0e-13 78.6 144 42.4
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 5.3e-13 78.2 186 36.6
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 5.3e-13 78.2 149 40.3
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 5.3e-13 78.2 185 38.4
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.2e-12 77.0 178 40.4
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 1.2e-12 77.0 213 33.3
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 1.5e-12 76.6 177 39.5
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 2.0e-12 76.3 181 35.4
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 2.6e-12 75.9 173 39.3
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.4e-12 75.5 178 39.9
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 3.4e-12 75.5 161 38.5
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 4.4e-12 75.1 203 36.0
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 5.8e-12 74.7 203 35.0
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 5.8e-12 74.7 175 38.3
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.8e-12 74.7 175 38.3
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.8e-12 74.7 175 38.3
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 7.6e-12 74.3 149 41.6
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 7.6e-12 74.3 45 88.9
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 9.9e-12 73.9 142 38.7
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 9.9e-12 73.9 172 37.2
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 1.7e-11 73.2 143 37.8
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.7e-11 73.2 178 37.6
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 2.9e-11 72.4 203 33.0
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 4.9e-11 71.6 158 37.3
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 6.4e-11 71.2 141 37.6
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 8.4e-11 70.9 142 37.3
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 8.4e-11 70.9 147 38.8
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 1.1e-10 70.5 141 39.0
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 1.1e-10 70.5 141 39.0
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 1.1e-10 70.5 171 30.4
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 1.4e-10 70.1 157 40.1
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 1.9e-10 69.7 141 39.0
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 1.9e-10 69.7 141 39.0
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 1.9e-10 69.7 179 38.5
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 1.9e-10 69.7 204 31.9
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 2.4e-10 69.3 141 39.0
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 2.4e-10 69.3 110 46.4
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 2.4e-10 69.3 138 42.8
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.4e-10 69.3 185 38.4
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 2.4e-10 69.3 182 35.2
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 4.2e-10 68.6 215 30.7
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 4.2e-10 68.6 47 76.6
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 4.2e-10 68.6 97 47.4
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 7.1e-10 67.8 123 41.5
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 7.1e-10 67.8 150 40.0
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 9.3e-10 67.4 206 30.1
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 1.6e-09 66.6 213 34.3
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 1.6e-09 66.6 140 36.4
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 2.1e-09 66.2 206 30.6
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 3.5e-09 65.5 182 34.6
Migut.N00134 Erythranthe guttata HOM05D001921 ORTHO05D001784 6.0e-09 64.7 165 36.4
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 6.0e-09 64.7 182 34.6
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 6.0e-09 64.7 88 50.0
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 7.8e-09 64.3 146 36.3
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.3e-08 63.5 50 70.0
SalBow5G1185 Salvia bowleyana HOM05D001921 ORTHO05D001784 1.3e-08 63.5 173 33.5
SalBow5G3126 Salvia bowleyana HOM05D001921 ORTHO05D001784 1.3e-08 63.5 173 33.5
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 2.3e-08 62.8 172 33.7
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 3.9e-08 62.0 212 34.0
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 3.9e-08 62.0 212 34.0
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 5.1e-08 61.6 98 48.0
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 5.1e-08 61.6 213 33.8
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 8.7e-08 60.8 127 36.2
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 1.1e-07 60.5 189 32.3
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 1.5e-07 60.1 52 65.4
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 1.5e-07 60.1 45 71.1
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 2.5e-07 59.3 141 34.0
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 2.5e-07 59.3 176 33.0
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 2.5e-07 59.3 172 34.9
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.5e-07 59.3 107 48.6
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 2.5e-07 59.3 133 37.6
DCAR_017895 Daucus carota HOM05D001921 ORTHO05D001784 4.3e-07 58.5 166 30.7
Hma1.2p1_0228F.1_g096620 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.3e-07 58.5 87 44.8
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 4.3e-07 58.5 193 32.1
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 5.6e-07 58.2 78 51.3
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 5.6e-07 58.2 52 65.4
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 5.6e-07 58.2 169 32.5
Glyma.06G064500 Glycine max HOM05D001921 ORTHO05D001784 7.3e-07 57.8 158 34.2
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 9.6e-07 57.4 126 38.9
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 9.6e-07 57.4 150 37.3
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 1.3e-06 57.0 171 34.5
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 1.3e-06 57.0 171 34.5
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 1.3e-06 57.0 112 36.6
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.1e-06 56.2 113 39.8
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 2.1e-06 56.2 208 29.8
TWI63G1839 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.1e-06 56.2 124 36.3
SEGI_33680 Sequoiadendron giganteum HOM05D001921 ORTHO05D001784 2.8e-06 55.8 148 31.8
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.8e-06 55.8 180 28.9
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.6e-06 55.5 113 39.8
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 4.8e-06 55.1 179 31.3
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 6.2e-06 54.7 180 30.0
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.1e-06 54.3 180 30.0
Phvul.009G089600 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 8.1e-06 54.3 142 32.4


User provided reference genes

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