Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.0e-134 483.4 244 100.0
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.5e-98 363.2 281 70.1
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 2.3e-70 269.6 284 52.1
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 5.7e-69 265.0 285 49.5
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.2e-68 263.1 286 49.7
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 6.3e-68 261.5 284 49.3
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.1e-67 260.8 284 49.3
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 5.9e-66 255.0 284 50.7
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.7e-65 253.4 287 48.4
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 2.2e-65 253.1 289 46.4
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 2.9e-65 252.7 286 48.6
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.1e-64 250.8 287 48.1
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.9e-64 250.0 285 47.0
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 3.2e-64 249.2 286 46.9
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.2e-63 247.3 287 47.0
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 4.7e-63 245.4 285 45.3
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 4.7e-63 245.4 284 45.8
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 6.1e-63 245.0 286 45.5
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 8.0e-63 244.6 284 47.2
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 8.0e-63 244.6 285 46.0
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.4e-62 243.8 284 46.5
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 2.3e-62 243.0 289 43.9
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 3.0e-62 242.7 286 47.6
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 3.9e-62 242.3 286 44.8
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.1e-61 240.7 287 46.3
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 1.1e-61 240.7 285 44.6
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.5e-61 240.4 285 45.3
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 2.6e-61 239.6 284 47.2
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 5.7e-61 238.4 284 44.0
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 7.4e-61 238.0 266 46.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 1.3e-60 237.3 282 44.7
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.7e-60 236.9 286 44.1
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 2.2e-60 236.5 284 44.4
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 2.2e-60 236.5 304 44.1
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 2.8e-60 236.1 281 46.6
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 4.8e-60 235.3 284 46.1
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 4.8e-60 235.3 310 42.9
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 6.3e-60 235.0 283 43.8
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 6.3e-60 235.0 280 44.6
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 8.2e-60 234.6 288 45.1
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 1.1e-59 234.2 284 44.4
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 1.8e-59 233.4 286 45.8
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.1e-59 232.6 287 42.5
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 4.1e-59 232.3 283 42.4
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 4.1e-59 232.3 287 42.9
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 5.3e-59 231.9 284 44.4
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 5.3e-59 231.9 283 41.7
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 5.3e-59 231.9 284 46.8
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 7.0e-59 231.5 285 44.2
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 9.1e-59 231.1 287 46.3
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.0e-58 229.9 284 47.2
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 2.0e-58 229.9 285 46.7
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 2.6e-58 229.6 284 46.1
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 2.6e-58 229.6 274 46.7
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 4.5e-58 228.8 294 42.9
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 1.0e-57 227.6 286 40.9
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 1.7e-57 226.9 282 46.5
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.7e-57 226.9 283 44.2
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 2.9e-57 226.1 285 44.9
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.9e-56 223.4 285 44.9
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 4.2e-56 222.2 317 38.8
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 4.2e-56 222.2 280 43.9
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 4.2e-56 222.2 289 43.6
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 4.2e-56 222.2 284 45.4
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.6e-55 219.2 284 41.9
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 4.7e-55 218.8 248 49.6
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 1.8e-54 216.9 257 45.9
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 2.3e-54 216.5 282 41.8
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 3.0e-54 216.1 286 41.3
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 6.7e-54 214.9 244 44.7
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 8.8e-54 214.5 284 42.3
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 8.8e-54 214.5 284 41.2
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.2e-53 214.2 285 42.8
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 5.7e-53 211.8 307 39.4
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 7.5e-53 211.5 312 40.4
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 2.2e-52 209.9 261 44.1
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 2.8e-52 209.5 284 41.5
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 6.3e-52 208.4 263 42.2
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 8.2e-52 208.0 283 41.3
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 1.1e-51 207.6 287 41.8
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 2.4e-51 206.5 316 38.6
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.2e-50 204.1 303 39.9
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 1.6e-50 203.8 184 58.7
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 2.0e-50 203.4 287 41.8
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 2.9e-49 199.5 303 39.3
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 2.5e-48 196.4 260 44.2
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 3.2e-48 196.1 290 38.6
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 2.1e-47 193.4 183 54.1
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 2.1e-47 193.4 185 54.1
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.1e-47 193.4 240 42.5
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 3.6e-47 192.6 255 42.4
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 8.8e-46 188.0 301 37.2
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 2.6e-45 186.4 284 37.7
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.2e-42 177.6 283 38.2
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.9e-41 172.9 284 37.7
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 3.6e-39 166.0 163 52.8
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 3.7e-36 156.0 281 34.2
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 7.0e-35 151.8 184 50.0
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 2.7e-34 149.8 104 64.4
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.7e-33 147.1 163 47.2
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 2.3e-33 146.7 202 41.1
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 3.8e-33 146.0 169 45.6
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 1.2e-31 141.0 276 35.9
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.6e-31 140.6 164 45.1
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 4.9e-28 129.0 146 45.2
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 5.4e-27 125.6 243 32.9
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 7.0e-27 125.2 175 39.4
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 1.9e-24 117.1 172 37.8
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 1.6e-23 114.0 284 31.0
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.3e-20 104.4 75 68.0
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.9e-16 90.5 150 37.3
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 2.5e-16 90.1 122 40.2
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 5.6e-16 89.0 54 74.1
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 4.7e-15 85.9 52 75.0
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 4.7e-15 85.9 126 41.3
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 4.0e-14 82.8 64 53.1
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 2.4e-11 73.6 150 33.3
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.2e-11 73.2 118 40.7
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 2.3e-09 67.0 46 60.9
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 8.6e-09 65.1 71 43.7
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 3.3e-08 63.2 151 28.5
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 6.8e-06 55.5 93 37.6
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 6.8e-06 55.5 126 33.3
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 6.8e-06 55.5 126 33.3


User provided reference genes

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