Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 7.7e-275 949.9 491 100.0
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 3.7e-128 462.6 354 68.1
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 4.1e-127 459.1 369 65.9
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 4.6e-126 455.7 359 66.0
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 1.1e-122 444.5 313 74.8
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 1.1e-122 444.5 342 68.1
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.2e-121 441.0 339 69.6
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 2.0e-121 440.3 331 68.9
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 5.8e-121 438.7 342 67.8
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 2.9e-120 436.4 345 67.8
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 1.1e-119 434.5 345 68.1
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 1.4e-119 434.1 335 68.4
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 4.1e-119 432.6 331 68.3
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 1.2e-118 431.0 344 66.9
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 3.5e-118 429.5 330 66.7
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 4.6e-118 429.1 332 66.0
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 2.3e-117 426.8 339 65.8
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 3.0e-117 426.4 334 66.8
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 1.1e-116 424.5 345 65.5
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 3.3e-116 422.9 305 71.8
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 3.3e-116 422.9 319 69.3
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 9.6e-116 421.4 314 71.0
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 1.2e-115 421.0 330 67.6
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 3.6e-115 419.5 331 67.4
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 1.4e-114 417.5 314 68.8
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 3.1e-114 416.4 320 65.9
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 3.1e-114 416.4 304 68.8
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 5.2e-114 415.6 336 65.5
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 6.8e-114 415.2 350 64.6
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 1.2e-113 414.5 304 69.1
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 1.2e-113 414.5 322 65.2
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 1.5e-113 414.1 341 64.8
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 2.6e-113 413.3 324 66.7
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 2.6e-113 413.3 341 65.1
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 4.4e-113 412.5 303 69.6
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 7.6e-113 411.8 325 65.8
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 7.6e-113 411.8 313 67.4
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 9.9e-113 411.4 325 66.5
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.3e-112 411.0 316 67.1
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 1.3e-112 411.0 299 69.2
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 1.7e-112 410.6 341 64.5
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 1.7e-112 410.6 332 65.1
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 2.2e-112 410.2 328 66.8
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 4.9e-112 409.1 356 62.9
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 8.4e-112 408.3 320 65.3
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 2.4e-111 406.8 342 64.0
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 2.4e-111 406.8 342 64.9
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 3.2e-111 406.4 311 69.1
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 3.2e-111 406.4 326 66.3
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 5.4e-111 405.6 307 68.4
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 9.3e-111 404.8 330 64.5
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 1.2e-110 404.4 308 67.5
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 1.6e-110 404.1 307 69.1
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 2.1e-110 403.7 302 69.9
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 3.5e-110 402.9 316 67.4
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 3.5e-110 402.9 344 63.1
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 6.0e-110 402.1 335 64.2
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 6.0e-110 402.1 362 61.6
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 1.3e-109 401.0 316 65.2
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 2.3e-109 400.2 316 64.9
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 2.3e-109 400.2 307 67.4
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 2.3e-109 400.2 315 67.0
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 3.9e-109 399.4 316 65.2
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 1.1e-108 397.9 327 64.5
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 5.6e-108 395.6 304 66.4
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 1.3e-107 394.4 329 63.2
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 2.8e-107 393.3 314 65.6
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 4.8e-107 392.5 304 66.1
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 8.1e-107 391.7 312 65.4
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 1.1e-106 391.3 319 63.9
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 1.1e-106 391.3 330 63.9
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 1.4e-106 391.0 332 62.3
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 1.8e-106 390.6 304 65.8
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 1.8e-106 390.6 303 68.0
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 4.0e-106 389.4 317 64.4
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 3.4e-105 386.3 319 63.3
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 4.4e-105 386.0 304 65.1
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 1.3e-104 384.4 324 63.6
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 5.4e-103 379.0 342 61.1
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 3.5e-102 376.3 330 62.1
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 1.3e-101 374.4 306 64.1
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 1.7e-101 374.0 330 62.4
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 3.9e-101 372.9 307 62.9
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 6.6e-101 372.1 326 60.4
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 1.5e-100 370.9 305 65.6
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 1.9e-100 370.5 311 64.6
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 2.8e-99 366.7 280 69.3
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 1.8e-98 364.0 272 68.8
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 4.9e-96 355.9 372 56.2
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 1.9e-95 354.0 301 63.1
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 3.4e-89 333.2 323 56.0
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 5.8e-89 332.4 308 55.2
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 5.8e-89 332.4 307 59.3
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 3.8e-88 329.7 309 56.6
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 7.1e-87 325.5 272 61.8
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 7.1e-87 325.5 263 68.1
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 2.7e-86 323.6 352 51.4
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 6.7e-85 318.9 285 59.3
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 2.8e-83 313.5 352 51.4
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 3.8e-80 303.1 219 69.9
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 2.7e-78 297.0 213 71.4
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 4.6e-78 296.2 279 59.5
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 2.8e-75 287.0 229 66.8
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 5.5e-71 272.7 199 70.4
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 2.3e-69 267.3 229 64.2
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 1.3e-67 261.5 329 46.2
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 5.0e-64 249.6 301 48.5
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 5.0e-64 249.6 291 51.5
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 2.7e-62 243.8 316 45.6
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 2.0e-60 237.7 301 45.5
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 1.7e-56 224.6 317 40.4
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 2.0e-52 211.1 175 60.6
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 9.1e-50 202.2 284 45.4
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 1.7e-43 181.4 339 36.3
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 2.5e-39 167.5 126 67.5
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 8.9e-29 132.5 100 66.0
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 1.7e-27 128.3 102 63.7
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 1.7e-27 128.3 102 63.7
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 4.7e-22 110.2 107 57.0
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.7e-19 101.7 96 58.3
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 1.7e-19 101.7 96 58.3
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 8.3e-19 99.4 90 53.3
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 1.4e-18 98.6 96 56.2
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 5.4e-18 96.7 94 59.6
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 6.4e-11 73.2 46 73.9
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 2.3e-08 64.7 82 47.6
Sc01g0004400 Simmondsia chinensis HOM05D039499 ORTHO05D388983 7.3e-07 59.7 100 35.0


User provided reference genes

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