Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0002890 Simmondsia chinensis HOM05D001700 ORTHO05D029965 2.3e-41 171.8 86 100.0
AUR62014312 Chenopodium quinoa HOM05D001700 ORTHO05D002131 1.1e-22 109.8 86 66.3
AUR62019053 Chenopodium quinoa HOM05D001700 ORTHO05D002131 1.6e-21 105.9 86 64.0
EL10Ac1g01042 Beta vulgaris HOM05D001700 ORTHO05D002131 2.9e-20 101.7 86 61.6
Hund17308 Selenicereus undatus HOM05D001700 ORTHO05D002131 5.0e-20 100.9 86 58.1
Ah.05g170920 Amaranthus hybridus HOM05D001700 ORTHO05D002131 1.1e-19 99.8 86 60.5
TAR628G0905 Trochodendron aralioides HOM05D001700 ORTHO05D002131 2.1e-18 95.5 86 57.0
Ciclev10000010m.g Citrus clementina HOM05D001700 ORTHO05D002131 1.0e-17 93.2 86 53.5
vmacro00848 Vaccinium macrocarpon HOM05D001700 ORTHO05D002131 1.4e-17 92.8 86 52.3
QL09p033882 Quercus lobata HOM05D001700 ORTHO05D002131 1.8e-17 92.4 86 52.3
GSVIVG01008840001 Vitis vinifera HOM05D001700 ORTHO05D002131 1.8e-17 92.4 86 54.7
Hund26795 Selenicereus undatus HOM05D001700 ORTHO05D002131 3.0e-17 91.7 86 53.5
Manes.02G165900 Manihot esculenta HOM05D001700 ORTHO05D002131 4.0e-17 91.3 86 53.5
Actinidia03457 Actinidia chinensis HOM05D001700 ORTHO05D002131 6.8e-17 90.5 86 52.3
COL.COLO4_37944 Corchorus olitorius HOM05D001700 ORTHO05D002131 1.2e-16 89.7 86 54.7
Dinv27287 Davidia involucrata HOM05D001700 ORTHO05D002131 1.5e-16 89.4 86 51.2
MD00G1028700 Malus domestica HOM05D001700 ORTHO05D002131 2.6e-16 88.6 86 51.2
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 3.4e-16 88.2 86 53.5
Gorai.010G051700 Gossypium raimondii HOM05D001700 ORTHO05D002131 5.7e-16 87.4 86 53.5
Nitab4.5_0000322g0070 Nicotiana tabacum HOM05D001700 ORTHO05D002131 5.7e-16 87.4 86 50.0
Haze_17511 Corylus avellana HOM05D001700 ORTHO05D002131 7.5e-16 87.0 86 51.2
Rhsim11G0069800 Rhododendron simsii HOM05D001700 ORTHO05D002131 7.5e-16 87.0 86 51.2
Cc10_g12190 Coffea canephora HOM05D001700 ORTHO05D002131 1.3e-15 86.3 86 52.3
Prupe.1G493200 Prunus persica HOM05D001700 ORTHO05D002131 1.3e-15 86.3 86 48.8
CiPaw.15G034700 Carya illinoinensis HOM05D001700 ORTHO05D002131 2.2e-15 85.5 86 50.0
Thecc.08G128900 Theobroma cacao HOM05D001700 ORTHO05D002131 2.2e-15 85.5 86 54.7
Gohir.A06G045900 Gossypium hirsutum HOM05D001700 ORTHO05D002131 2.8e-15 85.1 86 52.3
Nitab4.5_0005296g0010 Nicotiana tabacum HOM05D001700 ORTHO05D002131 3.7e-15 84.7 86 48.8
Peaxi162Scf00051g01415 Petunia axillaris HOM05D001700 ORTHO05D002131 3.7e-15 84.7 86 51.2
Gohir.D06G046400 Gossypium hirsutum HOM05D001700 ORTHO05D002131 4.8e-15 84.3 86 52.3
PSO170G3601 Papaver somniferum HOM05D001700 ORTHO05D002131 6.3e-15 84.0 86 51.2
PSO528G0149 Papaver somniferum HOM05D001700 ORTHO05D002131 6.3e-15 84.0 86 51.2
Sabra05G0136000 Salix brachista HOM05D001700 ORTHO05D002131 6.3e-15 84.0 86 50.0
Aqoxy6G00256 Aquilegia oxysepala HOM05D001700 ORTHO05D002131 1.1e-14 83.2 86 50.0
FAN15G2251 Fragaria x ananassa HOM05D001700 ORTHO05D002131 1.1e-14 83.2 86 50.0
arahy.Tifrunner.gnm1.ann1.URWE26 Arachis hypogaea HOM05D001700 ORTHO05D002131 2.4e-14 82.0 86 51.2
arahy.Tifrunner.gnm1.ann1.ZV0KA8 Arachis hypogaea HOM05D001700 ORTHO05D002131 2.4e-14 82.0 86 51.2
Solyc11g017460.3 Solanum lycopersicum HOM05D001700 ORTHO05D002131 3.1e-14 81.6 86 45.3
Sopen11g009410 Solanum pennellii HOM05D001700 ORTHO05D002131 3.1e-14 81.6 86 45.3
Lj7A344T47 Lonicera japonica HOM05D001700 ORTHO05D002131 4.1e-14 81.3 86 47.7
CSS0041613 Camellia sinensis var. sinensis HOM05D001700 ORTHO05D002131 5.4e-14 80.9 86 50.0
Cpa.g.sc64.114 Carica papaya HOM05D001700 ORTHO05D002131 5.4e-14 80.9 86 46.5
FvH4_2g27420 Fragaria vesca HOM05D001700 ORTHO05D002131 5.4e-14 80.9 86 48.8
FAN24G0700 Fragaria x ananassa HOM05D001700 ORTHO05D002131 5.4e-14 80.9 86 48.8
Gohir.A05G236900 Gossypium hirsutum HOM05D001700 ORTHO05D002131 5.4e-14 80.9 87 50.6
Gohir.D05G239000 Gossypium hirsutum HOM05D001700 ORTHO05D002131 5.4e-14 80.9 87 50.6
Gorai.009G247700 Gossypium raimondii HOM05D001700 ORTHO05D002131 5.4e-14 80.9 87 50.6
MD15G1345100 Malus domestica HOM05D001700 ORTHO05D002131 5.4e-14 80.9 86 47.7
FAN20G2941 Fragaria x ananassa HOM05D001700 ORTHO05D002131 7.0e-14 80.5 86 47.7
CANSAT25G2795 Cannabis sativa HOM05D001700 ORTHO05D002131 9.1e-14 80.1 86 47.7
Cfa018569 Carpinus fangiana HOM05D001700 ORTHO05D002131 9.1e-14 80.1 86 50.0
RcHm_v2.0_Chr6g0296271 Rosa chinensis HOM05D001700 ORTHO05D002131 9.1e-14 80.1 86 47.7
Duzib093G1056 Durio zibethinus HOM05D001700 ORTHO05D002131 1.2e-13 79.7 86 51.2
Psat0s3542g0080 Pisum sativum HOM05D001700 ORTHO05D002131 1.2e-13 79.7 86 47.7
CSS0002742 Camellia sinensis var. sinensis HOM05D001700 ORTHO05D002131 1.6e-13 79.3 84 47.6
CSS0008281 Camellia sinensis var. sinensis HOM05D001700 ORTHO05D002131 1.6e-13 79.3 84 47.6
Potri.005G180100 Populus trichocarpa HOM05D001700 ORTHO05D002131 2.7e-13 78.6 86 46.5
Nitab4.5_0000111g0170 Nicotiana tabacum HOM05D001700 ORTHO05D002131 3.5e-13 78.2 81 46.9
Nitab4.5_0004208g0020 Nicotiana tabacum HOM05D001700 ORTHO05D002131 3.5e-13 78.2 81 46.9
PGSC0003DMG400011768 Solanum tuberosum HOM05D001700 ORTHO05D002131 7.7e-13 77.0 86 45.3
TWI60G0911 Tripterygium wilfordii HOM05D001700 ORTHO05D002131 7.7e-13 77.0 86 45.3
CAN.G526.5 Capsicum annuum HOM05D001700 ORTHO05D002131 1.0e-12 76.6 81 45.7
ClCG11G015860 Citrullus lanatus HOM05D001700 ORTHO05D002131 1.0e-12 76.6 86 46.5
CAN.G643.5 Capsicum annuum HOM05D001700 ORTHO05D002131 1.3e-12 76.3 86 45.3
Sopen06g020280 Solanum pennellii HOM05D001700 ORTHO05D002131 1.7e-12 75.9 86 44.2
PGR042G3490 Punica granatum HOM05D001700 ORTHO05D002131 2.3e-12 75.5 86 45.3
Phvul.001G072300 Phaseolus vulgaris HOM05D001700 ORTHO05D002131 2.9e-12 75.1 86 46.5
Ca_12635_v3 Cicer arietinum L. HOM05D001700 ORTHO05D002131 3.8e-12 74.7 86 45.3
Oeu037226.1 Olea europaea HOM05D001700 ORTHO05D002131 3.8e-12 74.7 86 48.8
VMungo0647G0788 Vigna mungo HOM05D001700 ORTHO05D002131 3.8e-12 74.7 86 44.2
MSTRG.25371 Avicennia marina HOM05D001700 ORTHO05D002131 5.0e-12 74.3 84 51.2
TPR.G21979 Trifolium pratense HOM05D001700 ORTHO05D002131 5.0e-12 74.3 86 44.2
Migut.L00298 Erythranthe guttata HOM05D001700 ORTHO05D002131 6.6e-12 73.9 82 50.0
Lsat_1_v5_gn_4_137061 Lactuca sativa HOM05D001700 ORTHO05D002131 6.6e-12 73.9 86 43.0
ATR0584G057 Amborella trichopoda HOM05D001700 ORTHO05D002131 1.5e-11 72.8 75 50.7
Eucgr.F03806 Eucalyptus grandis HOM05D001700 ORTHO05D002131 1.5e-11 72.8 86 44.2
Lsat_1_v5_gn_1_61261 Lactuca sativa HOM05D001700 ORTHO05D029965 1.9e-11 72.4 86 43.0
Lsat_1_v5_gn_1_86520 Lactuca sativa HOM05D005244 ORTHO05D029965 1.9e-11 72.4 86 43.0
Lalb_Chr10g0101541 Lupinus albus HOM05D001700 ORTHO05D002131 2.5e-11 72.0 86 45.3
Medtr1g029790 Medicago truncatula HOM05D001700 ORTHO05D002131 5.5e-11 70.9 86 43.0
Nn5g28358 Nelumbo nucifera HOM05D001700 ORTHO05D002131 5.5e-11 70.9 86 43.0
Lj1g0027448 Lotus japonicus HOM05D001700 ORTHO05D002131 7.2e-11 70.5 86 43.0
Sed0000302 Sechium edule HOM05D001700 ORTHO05D002131 7.2e-11 70.5 86 44.2
Glyma.14G152500 Glycine max HOM05D001700 ORTHO05D002131 9.5e-11 70.1 86 43.0
AL2G37660 Arabidopsis lyrata HOM05D001700 ORTHO05D002131 1.2e-10 69.7 86 43.0
Thhalv10017994m.g Eutrema salsugineum HOM05D001700 ORTHO05D002131 1.2e-10 69.7 86 41.9
CARHR070980 Cardamine hirsuta HOM05D001700 ORTHO05D002131 1.6e-10 69.3 86 43.0
MELO3C010499.2 Cucumis melo HOM05D001700 ORTHO05D002131 1.6e-10 69.3 86 43.0
MBI06_g04544_MAGBIO Magnolia biondii HOM05D001700 ORTHO05D002131 1.6e-10 69.3 87 48.3
THA.LOC104813670 Tarenaya hassleriana HOM05D001700 ORTHO05D002131 2.1e-10 68.9 86 43.0
CsaV3_4G028120 Cucumis sativus L. HOM05D001700 ORTHO05D002131 4.7e-10 67.8 86 43.0
Glyma.13G030700 Glycine max HOM05D001700 ORTHO05D002131 4.7e-10 67.8 86 40.7
Oeu055287.1 Olea europaea HOM05D001700 ORTHO05D002131 6.1e-10 67.4 84 42.9
SalBow7G1804 Salvia bowleyana HOM05D001700 ORTHO05D002131 6.1e-10 67.4 81 45.7
Aa31LG4G7470 Aethionema arabicum HOM05D001700 ORTHO05D002131 8.0e-10 67.0 86 40.7
Carub.0002s2435 Capsella rubella HOM05D001700 ORTHO05D002131 8.0e-10 67.0 86 41.9
Sp5g32620 Schrenkiella parvula HOM05D001700 ORTHO05D002131 8.0e-10 67.0 86 40.7
SGA_v2.0_scaffold228G43271 Striga asiatica HOM05D001700 ORTHO05D002131 1.8e-09 65.9 82 43.9
BraA07t30445Z Brassica rapa HOM05D001700 ORTHO05D002131 6.8e-09 63.9 86 38.4
Lalb_Chr17g0343631 Lupinus albus HOM05D001700 ORTHO05D002131 6.8e-09 63.9 86 43.0
Nn1g08875 Nelumbo nucifera HOM05D001700 ORTHO05D002131 6.8e-09 63.9 87 43.7
BcaB02g07106 Brassica carinata HOM05D001700 ORTHO05D002131 8.9e-09 63.5 86 38.4
A07p28000 Brassica napus HOM05D001700 ORTHO05D002131 8.9e-09 63.5 86 38.4
C06p31250 Brassica napus HOM05D001700 ORTHO05D002131 1.2e-08 63.2 86 38.4
BolC6t38264H Brassica oleracea HOM05D001700 ORTHO05D002131 1.5e-08 62.8 86 38.4
AT1G77460 Arabidopsis thaliana HOM05D001700 ORTHO05D002131 2.0e-08 62.4 86 40.7
THA.LOC104800208 Tarenaya hassleriana HOM05D001700 ORTHO05D002131 1.7e-07 59.3 86 40.7
BcaC08g45477 Brassica carinata HOM05D001700 ORTHO05D002131 2.2e-07 58.9 86 37.2
Thhalv10011176m.g Eutrema salsugineum HOM05D001700 ORTHO05D002131 2.2e-07 58.9 86 39.5
Lsat_1_v5_gn_9_35760 Lactuca sativa HOM05D015688 ORTHO05D029965 2.2e-07 58.9 71 40.8
MBI03_g28542_MAGBIO Magnolia biondii HOM05D001700 ORTHO05D002131 2.2e-07 58.9 58 51.7
Sp1g33410 Schrenkiella parvula HOM05D001700 ORTHO05D002131 4.9e-07 57.8 86 33.7
CARHR035810 Cardamine hirsuta HOM05D001700 ORTHO05D002131 1.1e-06 56.6 86 36.0
AL1G52180 Arabidopsis lyrata HOM05D001700 ORTHO05D002131 1.4e-06 56.2 78 38.5
SEGI_38358 Sequoiadendron giganteum HOM05D001700 ORTHO05D002131 2.4e-06 55.5 52 53.8
Zm00001eb091240 Zea mays HOM05D001700 ORTHO05D002131 4.1e-06 54.7 87 34.5
HPP92_005691 Vanilla planifolia HOM05D001700 ORTHO05D002131 9.2e-06 53.5 57 47.4


User provided reference genes

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