Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 4.9e-97 357.8 184 100.0
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.4e-66 255.4 179 73.2
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 2.2e-65 252.7 179 72.6
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 3.2e-64 248.8 169 74.0
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.2e-63 246.9 166 75.9
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 1.6e-63 246.5 176 71.0
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 2.1e-63 246.1 177 70.1
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 6.0e-63 244.6 173 71.1
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 6.0e-63 244.6 172 71.5
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 1.0e-62 243.8 177 69.5
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 1.3e-62 243.4 176 69.3
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 1.7e-62 243.0 176 70.5
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 2.3e-62 242.7 169 72.2
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 2.3e-62 242.7 177 68.9
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 3.0e-62 242.3 171 73.7
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 3.9e-62 241.9 177 69.5
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 5.1e-62 241.5 178 65.7
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 5.1e-62 241.5 172 72.1
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 6.6e-62 241.1 172 71.5
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.5e-61 239.2 164 72.6
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 3.3e-61 238.8 169 71.6
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 5.6e-61 238.0 169 70.4
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 7.3e-61 237.7 173 69.9
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 7.3e-61 237.7 178 67.4
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 7.3e-61 237.7 175 68.0
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 7.3e-61 237.7 169 71.0
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 1.3e-60 236.9 171 69.0
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 2.1e-60 236.1 170 71.8
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 2.8e-60 235.7 178 67.4
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 2.8e-60 235.7 169 69.8
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 3.6e-60 235.3 169 71.6
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 4.8e-60 235.0 169 70.4
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 4.8e-60 235.0 174 67.2
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 6.2e-60 234.6 180 65.6
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 6.2e-60 234.6 173 68.2
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 8.1e-60 234.2 169 68.0
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 1.4e-59 233.4 176 66.5
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 1.8e-59 233.0 169 69.8
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 1.8e-59 233.0 169 69.8
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 2.4e-59 232.6 174 70.7
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 2.4e-59 232.6 173 68.2
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 3.1e-59 232.3 170 70.6
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 3.1e-59 232.3 170 70.6
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.1e-59 232.3 179 67.6
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 5.3e-59 231.5 169 69.2
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 5.3e-59 231.5 172 68.0
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 5.3e-59 231.5 174 70.7
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 6.9e-59 231.1 176 67.0
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 9.0e-59 230.7 177 65.0
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 9.0e-59 230.7 176 68.2
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 1.2e-58 230.3 170 70.0
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.2e-58 230.3 170 70.0
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 2.0e-58 229.6 164 73.2
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 2.6e-58 229.2 177 65.5
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 3.4e-58 228.8 183 66.7
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 4.4e-58 228.4 174 69.0
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 4.4e-58 228.4 169 65.7
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 4.4e-58 228.4 169 65.7
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 5.8e-58 228.0 165 69.1
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.3e-57 226.9 166 68.7
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 2.9e-57 225.7 169 68.0
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 6.4e-57 224.6 169 66.9
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 8.4e-57 224.2 175 64.6
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 1.9e-56 223.0 171 66.7
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.4e-56 222.6 176 64.8
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 5.4e-56 221.5 180 63.3
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.3e-56 220.7 186 64.5
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 7.9e-55 217.6 172 64.0
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 1.3e-54 216.9 173 64.7
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 1.7e-54 216.5 168 67.3
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 2.1e-52 209.5 166 65.7
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 6.2e-52 208.0 170 62.4
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.1e-51 207.2 141 75.2
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.1e-51 207.2 172 61.6
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.4e-51 206.8 173 61.8
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.4e-51 206.8 176 60.2
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.4e-51 206.1 175 60.6
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 3.1e-51 205.7 168 63.7
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 6.9e-51 204.5 145 70.3
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 2.0e-50 203.0 169 61.5
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 3.4e-50 202.2 162 62.3
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 4.5e-50 201.8 171 60.2
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 5.8e-50 201.4 141 70.9
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 5.8e-50 201.4 140 72.1
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 2.9e-49 199.1 177 61.0
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 4.9e-49 198.4 144 69.4
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 4.9e-49 198.4 251 49.0
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 4.6e-47 191.8 207 51.7
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 3.0e-46 189.1 177 57.1
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 3.3e-45 185.7 195 51.8
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 5.6e-45 184.9 138 66.7
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 6.2e-44 181.4 118 75.4
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 2.4e-43 179.5 138 68.1
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 1.2e-42 177.2 131 67.9
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 2.6e-42 176.0 140 67.1
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 8.4e-41 171.0 133 68.4
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.4e-40 170.2 175 52.0
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.7e-39 166.0 169 51.5
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 7.9e-39 164.5 166 51.8
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 1.8e-35 153.3 141 54.6
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 7.6e-34 147.9 120 64.2
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 1.1e-32 144.1 118 63.6
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 3.3e-29 132.5 162 41.4
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 3.8e-25 119.0 114 54.4
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 4.1e-19 99.0 87 60.9
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 3.4e-18 95.9 55 85.5
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 6.3e-12 75.1 49 79.6
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.1e-11 74.3 67 59.7
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 8.5e-09 64.7 39 79.5
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 2.7e-07 59.7 72 50.0


User provided reference genes

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