Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 8.6e-266 919.8 493 100.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 3.7e-200 701.8 495 77.2
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 3.1e-199 698.7 490 76.3
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 4.7e-195 684.9 494 73.9
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.6e-193 679.1 483 75.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.6e-193 679.1 500 74.0
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 7.4e-193 677.6 494 73.1
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.7e-192 676.4 506 72.5
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 6.3e-192 674.5 493 73.4
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 8.2e-192 674.1 493 75.3
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 5.3e-191 671.4 484 76.4
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 6.9e-191 671.0 494 74.5
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 9.1e-191 670.6 492 72.6
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.9e-188 662.9 494 73.7
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.2e-188 662.1 496 72.6
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 4.2e-188 661.8 489 73.8
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.2e-188 661.0 513 70.8
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 8.0e-187 657.5 493 71.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.0e-186 657.1 499 71.7
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.4e-186 656.8 494 74.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.0e-186 655.6 523 69.2
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 5.2e-186 654.8 491 71.7
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 8.8e-186 654.1 494 72.7
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.1e-185 653.7 484 72.5
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.5e-185 653.3 496 73.6
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 7.4e-185 651.0 494 74.1
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 9.7e-185 650.6 493 71.6
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.3e-184 650.2 496 72.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.8e-184 649.0 494 71.3
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-183 646.7 502 70.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.4e-183 646.7 474 74.3
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-183 646.4 497 72.8
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 2.4e-183 646.0 498 73.1
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.1e-183 645.2 497 72.6
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 4.1e-183 645.2 497 72.6
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.0e-183 644.4 497 72.8
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.2e-182 643.7 492 71.1
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.2e-182 643.7 495 70.5
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 2.0e-182 642.9 494 72.5
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 3.5e-182 642.1 491 71.5
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.5e-182 641.7 493 70.2
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 7.7e-182 641.0 493 70.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.0e-181 640.6 497 72.4
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.7e-181 639.8 492 70.5
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.9e-181 639.0 492 70.5
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 8.5e-181 637.5 467 74.3
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.1e-180 637.1 485 71.3
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.5e-180 636.7 495 70.7
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.9e-180 636.3 489 70.8
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 3.2e-180 635.6 489 70.6
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.6e-179 632.1 495 70.3
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 2.3e-178 629.4 494 70.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 3.0e-178 629.0 478 71.3
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.0e-177 626.3 496 69.2
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.0e-177 626.3 486 70.2
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 4.4e-177 625.2 491 69.5
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 5.7e-177 624.8 489 69.9
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 4.8e-176 621.7 491 69.2
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 4.8e-176 621.7 483 70.6
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.1e-175 620.5 495 69.3
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.8e-175 619.8 497 70.4
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.2e-174 617.1 492 69.1
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.6e-174 616.7 486 70.2
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 4.5e-174 615.1 486 70.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.9e-173 612.5 478 69.7
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.9e-173 612.5 472 72.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 8.5e-173 610.9 491 68.8
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 4.2e-172 608.6 499 67.7
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.7e-171 605.1 420 77.4
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 8.0e-171 604.4 492 68.7
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 8.0e-171 604.4 518 66.6
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 3.0e-170 602.4 499 68.1
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.5e-169 597.8 493 66.7
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.3e-168 597.0 495 65.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.7e-168 596.7 492 66.7
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 1.7e-168 596.7 501 66.9
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-168 596.7 488 67.4
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 2.2e-168 596.3 496 68.3
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.8e-168 595.9 492 68.3
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 4.8e-168 595.1 495 68.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 6.3e-168 594.7 492 66.7
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 6.3e-168 594.7 488 66.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.1e-167 594.0 489 67.1
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.1e-167 594.0 489 68.1
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.8e-167 593.2 493 66.9
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 2.4e-167 592.8 498 64.9
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 5.4e-167 591.7 491 67.2
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 5.4e-167 591.7 498 66.7
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 5.4e-167 591.7 476 67.9
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.2e-166 590.5 490 67.1
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.6e-166 590.1 490 66.7
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.3e-165 587.0 498 66.5
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.9e-165 585.9 490 66.5
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 5.0e-165 585.1 489 67.9
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 7.2e-164 581.3 496 65.5
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.2e-161 573.9 485 67.8
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.6e-161 572.8 492 64.6
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.6e-161 572.8 433 71.8
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.4e-161 572.4 492 65.0
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 7.5e-161 571.2 492 64.6
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-160 569.7 515 64.3
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.2e-158 563.9 481 64.7
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.5e-158 562.4 380 78.4
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.9e-157 559.3 481 65.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 4.6e-150 535.4 434 68.4
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 6.8e-146 521.5 531 60.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.4e-145 518.8 358 77.7
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 3.1e-138 496.1 472 59.1
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.3e-133 479.9 484 59.9
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.5e-132 477.2 498 56.4
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 7.8e-126 454.9 455 59.8
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 7.8e-126 454.9 393 67.2
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 8.1e-123 444.9 487 55.4
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 5.8e-121 438.7 403 61.8
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.7e-117 427.2 386 59.8
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 3.9e-109 399.4 368 63.9
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.1e-106 389.8 495 53.1
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 2.0e-97 360.5 387 57.6
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 2.0e-97 360.5 387 57.6
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.0e-96 358.2 206 84.5
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 4.5e-89 332.8 453 46.1
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.1e-87 328.2 324 55.2
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.5e-87 327.0 479 44.5
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.0e-85 321.6 423 50.4
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 3.9e-85 319.7 258 72.1
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-77 294.7 219 71.7
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 7.4e-76 288.9 389 44.5
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 7.7e-73 278.9 221 70.1
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.3e-69 267.3 202 76.2
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.4e-61 241.5 363 44.1
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.5e-57 226.5 276 51.1
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.0e-56 225.3 389 39.1
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.4e-50 203.0 411 35.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-43 181.8 164 61.6
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-37 162.2 96 79.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.2e-36 158.7 91 81.3
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 4.4e-36 156.8 133 62.4
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.8e-36 156.4 106 67.0
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-32 144.8 290 39.7
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.6e-30 138.3 87 78.2
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.8e-22 110.9 96 58.3
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.5e-20 105.1 122 51.6
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 3.4e-20 104.0 185 40.5
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 7.1e-18 96.3 126 48.4
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.9e-11 74.3 61 60.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.9e-11 74.3 61 60.7
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.1e-09 68.2 70 61.4
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.7e-09 67.8 61 55.7
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 8.7e-08 62.8 59 62.7
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.5e-07 61.2 50 68.0
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.3e-06 58.9 32 90.6
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.6e-06 58.5 68 47.1
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.8e-06 57.8 190 31.1


User provided reference genes

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