Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0002090 Simmondsia chinensis HOM05D006831 ORTHO05D008256 4.1e-80 301.6 181 100.0
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 9.5e-29 131.0 187 46.5
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 4.0e-27 125.6 172 47.7
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 6.8e-27 124.8 186 44.1
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 3.4e-26 122.5 171 48.5
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 1.1e-24 117.5 170 45.3
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 2.4e-24 116.3 179 44.7
Ah.01g022020 Amaranthus hybridus HOM05D006831 ORTHO05D008256 7.0e-24 114.8 167 41.9
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 9.2e-24 114.4 169 45.6
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 2.1e-23 113.2 170 45.9
FvH4_6g32300 Fragaria vesca HOM05D006831 ORTHO05D008256 4.6e-23 112.1 169 45.0
FAN05G2796 Fragaria x ananassa HOM05D006831 ORTHO05D008256 6.0e-23 111.7 169 45.0
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 7.8e-23 111.3 179 44.1
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 1.0e-22 110.9 166 44.6
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 1.0e-22 110.9 179 44.1
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 1.0e-22 110.9 170 44.1
VMungo0331G1511 Vigna mungo HOM05D006831 ORTHO05D008256 1.0e-22 110.9 172 45.3
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 2.3e-22 109.8 174 42.0
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 3.0e-22 109.4 189 42.9
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 5.1e-22 108.6 169 45.0
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 6.6e-22 108.2 174 41.4
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 6.6e-22 108.2 173 43.4
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 8.6e-22 107.8 178 42.1
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 1.1e-21 107.5 180 41.7
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 1.5e-21 107.1 169 44.4
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.5e-21 107.1 169 43.8
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 1.9e-21 106.7 172 41.3
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 1.9e-21 106.7 172 43.0
Phvul.010G145700 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 2.5e-21 106.3 172 44.8
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 3.3e-21 105.9 173 42.8
Glyma.08G201400 Glycine max HOM05D006831 ORTHO05D008256 3.3e-21 105.9 172 42.4
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 5.6e-21 105.1 182 42.9
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 5.6e-21 105.1 171 42.1
Eucgr.F03071 Eucalyptus grandis HOM05D006831 ORTHO05D008256 5.6e-21 105.1 184 41.8
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 5.6e-21 105.1 177 40.7
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 7.3e-21 104.8 174 42.5
Psat4g221040 Pisum sativum HOM05D006831 ORTHO05D008256 7.3e-21 104.8 173 41.6
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 7.3e-21 104.8 173 41.0
Glyma.07G015900 Glycine max HOM05D006831 ORTHO05D008256 9.5e-21 104.4 172 42.4
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 1.6e-20 103.6 169 42.6
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 1.6e-20 103.6 171 42.1
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 2.8e-20 102.8 175 41.7
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 2.8e-20 102.8 182 40.7
Sed0018864 Sechium edule HOM05D006831 ORTHO05D008256 3.6e-20 102.4 181 44.2
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 4.7e-20 102.1 173 39.9
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 6.2e-20 101.7 179 40.8
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 6.2e-20 101.7 179 40.8
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 6.2e-20 101.7 166 39.2
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 8.1e-20 101.3 174 41.4
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 8.1e-20 101.3 174 41.4
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 8.1e-20 101.3 180 42.2
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 1.1e-19 100.9 175 40.0
CiPaw.02G146100 Carya illinoinensis HOM05D006831 ORTHO05D008256 1.4e-19 100.5 182 43.4
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 1.4e-19 100.5 180 42.2
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 1.8e-19 100.1 166 39.8
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 2.3e-19 99.8 175 40.0
arahy.Tifrunner.gnm1.ann1.U3LBHC Arachis hypogaea HOM05D006831 ORTHO05D008256 6.8e-19 98.2 175 42.3
PGR102G2866 Punica granatum HOM05D006831 ORTHO05D008256 6.8e-19 98.2 168 39.9
arahy.Tifrunner.gnm1.ann1.4LXS91 Arachis hypogaea HOM05D006831 ORTHO05D008256 8.9e-19 97.8 176 42.0
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 8.9e-19 97.8 170 38.8
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 1.5e-18 97.1 186 41.9
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 4.4e-18 95.5 184 40.2
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 5.8e-18 95.1 169 40.2
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 7.5e-18 94.7 181 40.3
SalBow2G3477 Salvia bowleyana HOM05D006831 ORTHO05D008256 7.5e-18 94.7 168 37.5
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 9.9e-18 94.4 185 38.4
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 1.3e-17 94.0 165 38.8
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 1.3e-17 94.0 153 43.8
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 2.2e-17 93.2 168 43.5
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 3.7e-17 92.4 171 40.9
Medtr8g014330 Medicago truncatula HOM05D006831 ORTHO05D008256 6.4e-17 91.7 176 39.2
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 6.4e-17 91.7 153 43.1
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 1.4e-16 90.5 157 42.7
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 1.9e-16 90.1 169 39.6
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 1.9e-16 90.1 168 37.5
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 3.2e-16 89.4 173 37.0
Lsat_1_v5_gn_1_36980 Lactuca sativa HOM05D006831 ORTHO05D008256 4.1e-16 89.0 182 39.6
Lalb_Chr04g0262951 Lupinus albus HOM05D006831 ORTHO05D008256 2.1e-15 86.7 164 39.6
MBI04_g30107_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 2.1e-15 86.7 188 38.3
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 3.5e-15 85.9 147 41.5
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 3.5e-15 85.9 147 40.8
Phvul.005G166600 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 5.1e-14 82.0 165 37.0
HanXRQChr02g0032201 Helianthus annuus HOM05D006831 ORTHO05D008256 6.6e-14 81.6 152 40.8
Aqoxy7G01449 Aquilegia oxysepala HOM05D006831 ORTHO05D008256 5.6e-13 78.6 168 36.9
VMungo1080G0645 Vigna mungo HOM05D006831 ORTHO05D008256 8.1e-12 74.7 164 34.1
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 6.8e-11 71.6 183 37.2
MELO3C012995.2 Cucumis melo HOM05D006831 ORTHO05D008256 9.9e-10 67.8 182 35.2
Aa31LG4G70 Aethionema arabicum HOM05D006831 ORTHO05D008256 2.9e-09 66.2 87 40.2
AL2G41800 Arabidopsis lyrata HOM05D006831 ORTHO05D008256 1.4e-08 63.9 88 43.2
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 1.4e-08 63.9 213 30.0
THA.LOC104801499 Tarenaya hassleriana HOM05D006831 ORTHO05D008256 3.2e-08 62.8 95 37.9
AT1G79760 Arabidopsis thaliana HOM05D006831 ORTHO05D008256 5.4e-08 62.0 88 42.0
Sp5g36010 Schrenkiella parvula HOM05D006831 ORTHO05D008256 1.2e-07 60.8 141 34.0
CARHR262750 Cardamine hirsuta HOM05D006831 ORTHO05D008256 1.6e-07 60.5 88 42.0
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 1.6e-07 60.5 199 29.6
C06p28690 Brassica napus HOM05D006831 ORTHO05D008256 2.7e-07 59.7 88 37.5
BcaC08g45266 Brassica carinata HOM05D006831 ORTHO05D008256 4.6e-07 58.9 88 37.5
BolC6t38038H Brassica oleracea HOM05D006831 ORTHO05D008256 4.6e-07 58.9 88 37.5
Carub.0002s2775 Capsella rubella HOM05D006831 ORTHO05D008256 4.6e-07 58.9 88 39.8
A07p26290 Brassica napus HOM05D006831 ORTHO05D008256 6.0e-07 58.5 88 37.5
BraA07t30273Z Brassica rapa HOM05D006831 ORTHO05D008256 6.0e-07 58.5 88 37.5
CARHR262770 Cardamine hirsuta HOM05D006831 ORTHO05D008256 1.0e-06 57.8 88 40.9
Thhalv10018887m.g Eutrema salsugineum HOM05D006831 ORTHO05D008256 1.3e-06 57.4 88 36.4
HPP92_006371 Vanilla planifolia HOM05D006831 ORTHO05D008256 1.7e-06 57.0 159 34.0


User provided reference genes

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