Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 2.2e-76 288.9 147 100.0
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 9.7e-56 220.3 145 77.2
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.7e-55 219.5 146 80.8
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.2e-55 219.2 146 78.1
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 2.8e-55 218.8 147 78.2
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 3.7e-55 218.4 146 80.1
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 4.8e-55 218.0 146 78.1
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 4.8e-55 218.0 146 81.5
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 4.8e-55 218.0 146 79.5
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 6.3e-55 217.6 146 80.1
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 8.2e-55 217.2 146 80.1
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 1.1e-54 216.9 145 77.9
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 1.1e-54 216.9 148 76.4
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.1e-54 216.9 146 78.8
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.1e-54 216.9 146 77.4
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 4.1e-54 214.9 146 78.8
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.1e-54 214.9 146 78.1
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 5.3e-54 214.5 143 76.9
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 5.3e-54 214.5 143 76.9
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 6.9e-54 214.2 146 76.7
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 6.9e-54 214.2 146 76.7
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.9e-54 214.2 145 75.9
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 9.1e-54 213.8 146 78.8
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 9.1e-54 213.8 146 79.5
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 9.1e-54 213.8 146 78.8
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 9.1e-54 213.8 144 77.1
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 1.2e-53 213.4 145 77.9
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.2e-53 213.4 146 76.7
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.5e-53 213.0 145 75.9
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 2.0e-53 212.6 146 78.8
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 2.0e-53 212.6 145 75.9
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 2.0e-53 212.6 145 75.9
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 2.6e-53 212.2 146 76.7
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 2.6e-53 212.2 144 79.2
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 3.4e-53 211.8 145 73.8
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 4.5e-53 211.5 146 77.4
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 4.5e-53 211.5 145 76.6
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 5.9e-53 211.1 145 76.6
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 5.9e-53 211.1 145 75.9
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 5.9e-53 211.1 149 75.2
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 5.9e-53 211.1 146 77.4
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 5.9e-53 211.1 146 77.4
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 5.9e-53 211.1 146 74.7
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 7.7e-53 210.7 145 75.9
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 7.7e-53 210.7 145 75.9
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 7.7e-53 210.7 146 78.8
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 7.7e-53 210.7 146 78.8
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 7.7e-53 210.7 146 78.1
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 7.7e-53 210.7 145 75.2
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.0e-52 210.3 145 75.9
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.0e-52 210.3 145 75.2
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.0e-52 210.3 145 75.2
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.0e-52 210.3 145 74.5
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.0e-52 210.3 146 77.4
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.0e-52 210.3 146 75.3
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.3e-52 209.9 146 77.4
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 1.7e-52 209.5 146 73.3
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.7e-52 209.5 146 78.1
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 1.7e-52 209.5 146 76.0
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 1.7e-52 209.5 145 74.5
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 1.7e-52 209.5 146 76.7
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 2.9e-52 208.8 145 73.8
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 2.9e-52 208.8 145 75.9
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.9e-52 208.8 146 76.7
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.9e-52 208.8 146 74.7
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 3.8e-52 208.4 145 75.9
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 3.8e-52 208.4 145 75.2
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 5.0e-52 208.0 139 79.9
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 6.5e-52 207.6 146 73.3
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 8.5e-52 207.2 146 76.7
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 8.5e-52 207.2 145 74.5
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.1e-51 206.8 146 76.0
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 1.1e-51 206.8 146 77.4
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 1.1e-51 206.8 146 75.3
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.1e-51 206.8 145 73.1
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 1.4e-51 206.5 145 75.2
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 1.9e-51 206.1 149 75.2
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 2.5e-51 205.7 146 72.6
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 2.5e-51 205.7 145 74.5
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 5.5e-51 204.5 145 73.1
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 7.2e-51 204.1 145 73.1
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 7.2e-51 204.1 146 73.3
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 9.4e-51 203.8 135 77.0
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 9.4e-51 203.8 146 73.3
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 9.4e-51 203.8 145 75.2
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 9.4e-51 203.8 141 73.8
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 9.4e-51 203.8 145 76.6
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 1.2e-50 203.4 146 71.9
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 1.2e-50 203.4 146 71.9
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.6e-50 203.0 146 71.2
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.6e-50 203.0 143 74.8
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.6e-50 203.0 145 72.4
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 1.6e-50 203.0 146 75.3
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 1.6e-50 203.0 147 74.1
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 1.6e-50 203.0 147 74.1
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 2.1e-50 202.6 146 71.9
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 2.1e-50 202.6 146 71.9
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 2.1e-50 202.6 146 71.9
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 2.7e-50 202.2 145 70.3
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 2.7e-50 202.2 144 74.3
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 2.7e-50 202.2 145 69.7
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 3.6e-50 201.8 145 70.3
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 3.6e-50 201.8 146 71.9
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 4.7e-50 201.4 146 71.2
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 4.7e-50 201.4 146 71.2
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 4.7e-50 201.4 146 71.9
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 4.7e-50 201.4 144 74.3
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 4.7e-50 201.4 150 74.7
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 6.1e-50 201.1 146 71.2
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 6.1e-50 201.1 146 71.2
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 6.1e-50 201.1 145 70.3
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 6.1e-50 201.1 146 71.2
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 6.1e-50 201.1 138 75.4
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 7.9e-50 200.7 146 71.2
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 7.9e-50 200.7 146 71.2
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 7.9e-50 200.7 147 70.7
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 1.0e-49 200.3 145 73.1
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 1.4e-49 199.9 145 69.0
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 1.4e-49 199.9 145 69.0
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 1.4e-49 199.9 145 73.1
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 1.8e-49 199.5 145 69.0
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 1.8e-49 199.5 145 69.0
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 1.8e-49 199.5 145 69.0
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 1.8e-49 199.5 135 75.6
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 2.3e-49 199.1 145 73.1
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.3e-49 199.1 145 73.1
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 3.0e-49 198.7 146 71.9
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 3.0e-49 198.7 145 71.7
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 3.9e-49 198.4 145 69.0
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 3.9e-49 198.4 145 69.0
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 5.1e-49 198.0 131 74.8
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 5.1e-49 198.0 145 72.4
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 6.7e-49 197.6 145 69.0
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 6.7e-49 197.6 145 68.3
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 6.7e-49 197.6 146 75.3
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 8.8e-49 197.2 145 69.7
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 8.8e-49 197.2 145 69.0
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 8.8e-49 197.2 145 73.8
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.5e-48 196.4 145 71.7
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 1.5e-48 196.4 145 71.7
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.6e-48 195.7 129 76.7
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 3.3e-48 195.3 145 73.8
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 4.4e-48 194.9 146 74.0
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 5.7e-48 194.5 145 67.6
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 7.4e-48 194.1 138 76.1
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-47 193.4 141 69.5
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 1.7e-47 193.0 145 71.7
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 6.3e-47 191.0 131 72.5
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 8.2e-47 190.7 133 72.9
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 9.1e-46 187.2 99 91.9
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 4.2e-43 178.3 99 84.8
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 4.2e-43 178.3 145 66.2
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 6.1e-42 174.5 99 83.8
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 3.0e-41 172.2 146 65.1
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 3.9e-41 171.8 148 64.2
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 2.2e-39 166.0 136 60.3
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.6e-37 159.8 138 56.5
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 1.0e-36 157.1 134 65.7
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 2.6e-32 142.5 144 54.9
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 3.7e-31 138.7 143 53.8
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 2.1e-26 122.9 98 67.3
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 3.6e-26 122.1 145 55.2
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 5.7e-24 114.8 144 52.1
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 1.3e-23 113.6 144 52.8
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 1.1e-22 110.5 89 71.9
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 1.4e-22 110.2 60 90.0
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 2.0e-21 106.3 75 69.3
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 2.0e-21 106.3 73 69.9
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 2.0e-21 106.3 86 68.6
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 2.6e-16 89.4 126 40.5
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 8.6e-12 74.3 110 40.9
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 2.5e-11 72.8 63 60.3
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 2.8e-10 69.3 68 58.8
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 6.1e-10 68.2 123 42.3
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 6.8e-09 64.7 43 74.4
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 2.2e-07 59.7 30 86.7
TAR629G2234 Trochodendron aralioides HOM05D002207 ORTHO05D002250 7.0e-06 54.7 43 69.8


User provided reference genes

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