Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0001330 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.9e-116 421.4 200 100.0
Sc21g0004040 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.7e-87 326.2 174 87.9
Sc17g0002300 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.4e-86 323.2 174 86.8
Sc17g0002350 Simmondsia chinensis HOM05D009209 ORTHO05D011705 6.1e-61 238.0 123 88.6
Sc03g0004550 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.7e-58 229.9 172 65.1
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 6.5e-47 191.4 124 70.2
Sc15g0003580 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.0e-44 182.6 158 58.9
Sc14g0002520 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.4e-43 179.1 168 55.4
Sc15g0000880 Simmondsia chinensis HOM05D009209 ORTHO05D011705 5.8e-35 151.8 75 85.3
Sc11g0007070 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.9e-30 136.7 110 57.3
Sc01g0007590 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.0e-23 112.8 68 70.6
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.6e-21 107.1 61 72.1
CSS0042161 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 9.2e-17 91.3 122 36.1
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 9.2e-17 91.3 150 32.7
CSS0025340 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.2e-16 90.9 122 36.1
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-16 90.9 150 32.7
CSS0000615 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.6e-16 90.5 122 36.1
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-16 90.5 150 34.0
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.7e-16 89.7 150 32.7
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 4.6e-16 89.0 188 29.8
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.7e-15 87.0 122 33.6
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.9e-14 83.6 149 30.9
Sc22g0002500 Simmondsia chinensis HOM05D009209 ORTHO05D011705 9.5e-14 81.3 60 65.0
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 3.6e-13 79.3 123 33.3
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.2e-13 78.6 128 31.2
CSS0028826 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 8.1e-13 78.2 116 34.5
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 8.1e-13 78.2 108 33.3
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.2e-12 75.5 159 27.0
CSS0004424 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 6.8e-12 75.1 95 36.8
CSS0042776 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.0e-11 73.6 122 32.8
Ah.15g098970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.7e-10 70.5 109 33.9
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.8e-10 69.3 80 40.0
Sc10g0009390 Simmondsia chinensis HOM05D011136 ORTHO05D010856 3.8e-10 69.3 112 26.8
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 3.8e-10 69.3 112 29.5
EL10Ac1g00211 Beta vulgaris HOM05D008976 ORTHO05D011121 6.4e-10 68.6 125 32.8
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 6.4e-10 68.6 122 28.7
EL10Ac6g15260 Beta vulgaris HOM05D008976 ORTHO05D011121 8.4e-10 68.2 125 32.8
EL10Ac6g15678 Beta vulgaris HOM05D008976 ORTHO05D011121 8.4e-10 68.2 97 39.2
Rhsim10G0135400 Rhododendron simsii HOM05D001175 ORTHO05D003291 8.4e-10 68.2 97 34.0
Sc03g0004030 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.1e-09 67.8 32 87.5
Sc03g0004050 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.1e-09 67.8 32 87.5
Thecc.05G279300 Theobroma cacao HOM05D012808 ORTHO05D000006 1.1e-09 67.8 98 33.7
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 1.1e-09 67.8 81 37.0
EL10Ac3g05379 Beta vulgaris HOM05D008976 ORTHO05D011121 1.4e-09 67.4 125 30.4
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 3.2e-09 66.2 88 35.2
EL10Ac8g19650 Beta vulgaris HOM05D000992 ORTHO05D006704 7.1e-09 65.1 97 36.1
Sc21g0005420 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.1e-09 65.1 144 20.8
EL10Ac5g10790 Beta vulgaris HOM05D008976 ORTHO05D011121 9.2e-09 64.7 126 30.2
EL10Ac2g04471 Beta vulgaris HOM05D008976 ORTHO05D011121 1.2e-08 64.3 123 34.1
CSS0009574 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.2e-08 64.3 104 32.7
Ah.03g144970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-08 63.9 89 31.5
Ah.11g041130 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-08 63.9 119 32.8
EL10Ac5g12917 Beta vulgaris HOM05D008976 ORTHO05D011121 1.6e-08 63.9 126 28.6
EL10Ac6g13580 Beta vulgaris HOM05D008976 ORTHO05D011121 1.6e-08 63.9 126 28.6
EL10Ac1g00331 Beta vulgaris HOM05D008976 ORTHO05D011121 2.1e-08 63.5 126 29.4
EL10Ac4g09899 Beta vulgaris HOM05D008976 ORTHO05D011121 2.7e-08 63.2 79 32.9
Sc02g0007500 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.7e-08 63.2 56 48.2
Actinidia11343 Actinidia chinensis HOM05D019814 ORTHO05D009356 3.5e-08 62.8 98 34.7
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.5e-08 62.8 94 30.9
Medtr1g033680 Medicago truncatula HOM05D002777 ORTHO05D001516 3.5e-08 62.8 106 27.4
Lj6g0012166 Lotus japonicus HOM05D002777 ORTHO05D001516 4.6e-08 62.4 123 25.2
Medtr7g108760 Medicago truncatula HOM05D008558 ORTHO05D000006 6.0e-08 62.0 100 34.0
Medtr8g058470 Medicago truncatula HOM05D008558 ORTHO05D000006 6.0e-08 62.0 100 34.0
EL10Ac4g09831 Beta vulgaris HOM05D008976 ORTHO05D011121 7.8e-08 61.6 78 35.9
Ah.08g219520 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.0e-07 61.2 72 34.7
Sc10g0010640 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.0e-07 61.2 139 23.7
Lj6g0024174 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-07 60.8 163 22.1
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.3e-07 60.8 80 33.8
Ah.04g161050 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.7e-07 60.5 87 34.5
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.7e-07 60.5 91 33.0
EL10Ac2g04475 Beta vulgaris HOM05D008976 ORTHO05D011121 1.7e-07 60.5 125 31.2
EL10Ac6g14951 Beta vulgaris HOM05D008976 ORTHO05D011121 1.7e-07 60.5 79 36.7
Sc15g0000710 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.7e-07 60.5 61 50.8
Ah.05g173080 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.3e-07 60.1 110 29.1
EL10Ac5g11650 Beta vulgaris HOM05D008976 ORTHO05D011121 2.3e-07 60.1 160 27.5
Gorai.002G084400 Gossypium raimondii HOM05D000003 ORTHO05D015081 2.3e-07 60.1 95 31.6
Lj5g0007242 Lotus japonicus HOM05D002777 ORTHO05D001516 3.0e-07 59.7 97 32.0
EL10Ac2g02473 Beta vulgaris HOM05D008976 ORTHO05D011121 3.9e-07 59.3 147 24.5
Lj1g0014390 Lotus japonicus HOM05D002777 ORTHO05D001516 3.9e-07 59.3 123 24.4
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 5.1e-07 58.9 99 23.2
EL10Ac7g17245 Beta vulgaris HOM05D008976 ORTHO05D011121 6.6e-07 58.5 79 36.7
EL10Ac1g02070 Beta vulgaris HOM05D008976 ORTHO05D011121 1.1e-06 57.8 149 26.2
Gorai.009G210100 Gossypium raimondii HOM05D019814 ORTHO05D025702 1.1e-06 57.8 112 28.6
EL10Ac5g12223 Beta vulgaris HOM05D008976 ORTHO05D011121 1.5e-06 57.4 122 26.2
EL10Ac4g08137 Beta vulgaris HOM05D008976 ORTHO05D011121 1.9e-06 57.0 125 32.0
Psat5g038560 Pisum sativum HOM05D007807 ORTHO05D001516 1.9e-06 57.0 96 27.1
Lsat_1_v5_gn_9_62980 Lactuca sativa HOM05D003915 ORTHO05D005386 2.5e-06 56.6 105 32.4
vmacro09750 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 2.5e-06 56.6 106 30.2
Lsat_1_v5_gn_2_130020 Lactuca sativa HOM05D003915 ORTHO05D005386 3.3e-06 56.2 123 30.1
Lsat_1_v5_gn_4_104301 Lactuca sativa HOM05D003915 ORTHO05D005386 3.3e-06 56.2 115 28.7
Sc11g0004570 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.3e-06 56.2 107 23.4
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 3.3e-06 56.2 120 23.3
EL10Ac4g10257 Beta vulgaris HOM05D008976 ORTHO05D011121 4.3e-06 55.8 78 35.9
Lsat_1_v5_gn_1_31001 Lactuca sativa HOM05D003915 ORTHO05D005386 4.3e-06 55.8 122 28.7
Sc13g0006150 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.3e-06 55.8 101 24.8
Medtr2g103400 Medicago truncatula HOM05D002777 ORTHO05D001516 7.3e-06 55.1 130 25.4
Sc02g0007120 Simmondsia chinensis HOM05D011136 ORTHO05D010856 7.3e-06 55.1 61 34.4
Sc06g0006060 Simmondsia chinensis HOM05D011136 ORTHO05D010856 7.3e-06 55.1 79 29.1
Sc20g0003570 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.3e-06 55.1 98 25.5


User provided reference genes

Program Settings