Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 0.0e+00 1595.9 837 100.0
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 5.1e-93 346.7 917 35.0
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 4.6e-86 323.6 853 34.3
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.2e-78 298.9 876 31.5
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 6.0e-78 296.6 848 31.7
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.9e-77 293.9 853 33.8
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.5e-76 292.0 839 32.2
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.5e-76 292.0 839 32.2
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 4.3e-76 290.4 855 32.5
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 5.7e-76 290.0 936 30.4
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.2e-73 282.3 945 30.2
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 4.5e-73 280.4 856 33.1
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 7.7e-73 279.6 847 31.3
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 2.9e-72 277.7 853 32.6
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 6.5e-72 276.6 844 32.1
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.2e-71 274.2 844 32.7
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.2e-71 273.9 844 32.9
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 3.6e-70 270.8 845 32.1
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.4e-69 268.9 861 31.2
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.8e-69 268.5 843 31.8
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 3.0e-69 267.7 852 31.3
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 6.7e-69 266.5 848 31.1
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 1.1e-68 265.8 833 32.5
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 7.4e-68 263.1 811 31.2
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 1.3e-67 262.3 898 30.7
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 2.8e-67 261.2 869 30.8
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.1e-66 257.7 859 29.1
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 6.9e-66 256.5 861 30.3
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.0e-64 252.7 846 31.4
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 2.2e-64 251.5 872 30.2
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 2.2e-64 251.5 856 30.7
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.5e-63 246.9 852 30.2
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.7e-62 244.6 753 32.7
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 2.7e-62 244.6 856 29.9
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 6.1e-62 243.4 848 30.4
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 6.7e-61 240.0 902 28.3
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 1.5e-60 238.8 875 29.0
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.0e-60 238.4 870 30.8
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.4e-60 237.3 423 37.8
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.4e-60 237.3 760 32.1
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.1e-58 232.6 752 32.6
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 1.5e-57 228.8 848 28.3
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.0e-57 228.4 840 30.5
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 3.5e-57 227.6 394 39.3
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 4.5e-57 227.3 857 28.6
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.8e-56 224.2 846 30.0
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 8.5e-56 223.0 854 28.6
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.4e-55 222.2 828 29.7
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 1.2e-54 219.2 796 28.6
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.1e-54 218.4 876 28.0
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 3.6e-54 217.6 862 28.7
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 2.3e-53 214.9 835 26.7
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 3.0e-53 214.5 846 28.1
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.9e-53 214.2 864 29.4
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 8.8e-53 213.0 865 29.0
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.1e-52 212.6 448 35.5
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 2.0e-52 211.8 764 30.4
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 5.7e-52 210.3 838 27.8
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 9.7e-52 209.5 963 27.8
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 9.7e-52 209.5 838 27.3
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 1.3e-51 209.1 845 29.2
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 2.2e-51 208.4 854 27.5
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 6.3e-51 206.8 846 27.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 2.0e-49 201.8 851 27.4
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 2.6e-49 201.4 857 26.5
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 3.5e-49 201.1 844 26.3
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 1.3e-48 199.1 847 27.0
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.7e-48 198.7 848 28.3
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 2.9e-48 198.0 833 26.8
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 8.5e-48 196.4 381 37.0
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 8.5e-48 196.4 753 29.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 8.5e-48 196.4 860 28.1
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.9e-47 195.3 854 28.1
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 3.2e-47 194.5 801 27.0
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.2e-46 192.6 803 29.1
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.2e-46 192.6 893 27.9
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 2.7e-46 191.4 868 27.6
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 4.0e-45 187.6 858 27.3
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 3.4e-44 184.5 849 25.4
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 4.4e-44 184.1 865 27.1
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 5.7e-44 183.7 843 26.8
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 4.8e-43 180.6 856 27.0
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 8.3e-43 179.9 932 26.3
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.1e-42 179.5 876 25.9
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.6e-41 175.6 854 25.8
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 2.7e-41 174.9 967 24.9
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.1e-39 169.5 968 26.7
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 1.1e-39 169.5 863 28.7
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.9e-39 168.7 849 26.6
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 8.0e-38 163.3 850 27.1
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 1.0e-37 162.9 979 27.0
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 4.0e-37 161.0 870 26.0
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 2.6e-36 158.3 759 28.5
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 1.1e-34 152.9 846 27.1
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 5.4e-34 150.6 435 30.6
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 2.3e-32 145.2 849 27.7
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 1.1e-31 142.9 850 26.9
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 2.8e-30 138.3 748 25.8
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 8.0e-30 136.7 782 26.5
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 3.0e-29 134.8 759 26.7
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 1.2e-28 132.9 612 27.8
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.5e-28 132.5 710 25.5
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.5e-28 132.5 877 25.8
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 4.4e-28 131.0 416 28.8
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 2.8e-27 128.3 781 25.7
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 5.4e-26 124.0 850 24.1
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 7.0e-26 123.6 811 23.3
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.6e-25 122.5 811 24.7
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 1.6e-25 122.5 87 71.3
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.6e-25 122.5 87 71.3
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 1.6e-25 122.5 87 71.3
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.6e-25 122.5 883 25.4
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 2.7e-25 121.7 87 70.1
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.5e-25 121.3 145 51.0
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 7.8e-25 120.2 87 70.1
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.7e-24 119.0 606 25.2
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 2.3e-24 118.6 849 23.8
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 2.3e-24 118.6 415 30.4
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 1.5e-23 115.9 340 30.9
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 1.9e-23 115.5 87 66.7
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 3.3e-23 114.8 700 26.1
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 8.0e-22 110.2 81 69.1
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.3e-21 108.6 115 54.8
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 9.8e-20 103.2 893 23.6
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.3e-19 102.8 117 50.4
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.4e-18 99.4 111 48.6
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.5e-15 89.4 400 26.2
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 4.3e-15 87.8 83 50.6
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 9.5e-15 86.7 92 56.5
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 3.6e-14 84.7 99 51.5
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 6.2e-14 84.0 711 25.0
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 1.8e-13 82.4 146 36.3
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 5.2e-13 80.9 169 36.7
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 2.0e-12 79.0 114 43.9
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 2.6e-12 78.6 163 35.0
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 7.5e-12 77.0 152 36.8
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.7e-11 75.9 325 28.9
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.9e-11 74.3 145 35.9
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 3.2e-10 71.6 750 23.3
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 5.4e-10 70.9 121 38.8
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 2.1e-09 68.9 52 59.6
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 3.0e-08 65.1 109 41.3
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.1e-07 63.2 194 30.4
MCO08G035 Micromonas commoda HOM05D004831 ORTHO05D003975 5.6e-07 60.8 81 49.4
HanXRQChr12g0366341 Helianthus annuus HOM05D004831 ORTHO05D003975 2.8e-06 58.5 102 36.3


User provided reference genes

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