Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1589.3 774 100.0
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 0.0e+00 1092.0 784 70.2
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1081.2 775 68.9
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 6.8e-310 1067.0 766 69.3
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.6e-309 1065.1 775 68.5
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.3e-308 1062.8 775 68.4
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.9e-307 1058.9 781 67.1
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.7e-306 1055.0 781 67.3
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.0e-305 1053.1 779 66.1
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.5e-304 1049.3 825 64.4
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 1.9e-304 1048.9 802 66.8
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 771 67.6
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 3.3e-304 1048.1 779 66.8
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.6e-303 1045.8 780 66.2
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.7e-303 1044.3 784 66.7
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 6.2e-303 1043.9 774 66.3
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 4.4e-301 1037.7 787 66.1
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.6e-301 1036.9 796 65.3
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 9.9e-301 1036.6 767 67.7
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 1.7e-300 1035.8 778 65.7
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 3.8e-300 1034.6 772 66.2
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 6.4e-300 1033.9 778 65.7
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 8.4e-300 1033.5 785 66.6
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.1e-299 1033.1 786 65.9
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 4.2e-299 1031.2 772 65.9
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 4.2e-299 1031.2 788 66.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 7.1e-299 1030.4 772 65.9
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 9.3e-299 1030.0 772 65.7
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 785 65.2
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 3.3e-296 1021.5 772 65.5
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 5.6e-296 1020.8 765 66.0
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 9.6e-296 1020.0 766 66.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.1e-295 1018.8 774 64.7
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 2.8e-295 1018.5 772 66.2
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 6.2e-295 1017.3 767 66.9
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.4e-294 1015.4 773 64.7
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 9.0e-294 1013.4 770 66.5
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 1.5e-293 1012.7 774 64.9
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.2e-292 1008.8 757 66.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 785 64.8
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 4.2e-291 1004.6 778 63.0
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 4.2e-291 1004.6 766 64.9
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 9.3e-291 1003.4 787 65.2
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 9.3e-291 1003.4 787 65.2
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 9.3e-291 1003.4 776 64.2
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 787 65.2
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 2.1e-290 1002.3 769 66.4
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.7e-290 1001.9 790 64.3
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 3.5e-290 1001.5 768 65.8
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.6e-290 1001.1 767 65.2
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 2.3e-289 998.8 767 64.7
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 5.1e-289 997.7 779 64.7
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.3e-288 995.0 767 64.7
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 9.6e-288 993.4 767 64.4
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 5.3e-286 987.6 767 64.3
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.5e-285 986.1 784 62.6
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 5.8e-285 984.2 785 62.5
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.3e-284 983.0 766 64.8
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.7e-284 982.6 782 63.2
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.4e-284 980.3 765 64.7
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-283 979.9 769 64.5
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.1e-283 979.9 769 64.6
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.1e-282 975.7 766 64.0
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 4.6e-282 974.5 766 63.6
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.8e-281 972.6 766 64.4
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 3.9e-281 971.5 751 65.1
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.5e-280 968.8 781 63.5
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.4e-280 967.2 768 64.2
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.6e-279 966.1 768 63.0
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.4e-278 963.0 778 62.0
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 4.5e-277 958.0 782 61.3
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 1.9e-275 952.6 775 62.1
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.9e-275 952.6 774 62.8
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-274 949.9 774 61.9
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 3.5e-274 948.3 780 61.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.0e-273 946.8 774 61.8
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.3e-273 946.4 773 62.7
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.3e-273 946.4 787 60.5
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 8.7e-273 943.7 769 63.2
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 8.7e-273 943.7 785 60.6
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.1e-272 943.3 770 61.9
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.1e-272 943.3 790 60.0
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.9e-272 942.6 782 61.8
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 2.5e-272 942.2 782 59.7
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.3e-272 941.8 769 61.9
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 5.7e-272 941.0 781 61.8
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 5.7e-272 941.0 772 61.7
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 7.4e-272 940.6 769 62.2
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 7.4e-272 940.6 777 62.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 4.8e-271 937.9 777 60.5
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.1e-270 936.8 769 62.4
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.1e-270 936.8 774 61.8
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.4e-270 936.4 787 59.8
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 4.1e-270 934.9 774 61.1
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.8e-269 931.0 766 61.0
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.9e-268 928.7 788 60.8
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 2.9e-268 928.7 783 60.3
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 2.9e-268 928.7 772 60.8
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 3.8e-268 928.3 772 60.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 6.5e-268 927.5 764 62.2
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 5.5e-267 924.5 791 60.7
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.6e-266 922.9 788 59.8
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 2.1e-266 922.5 764 62.0
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.7e-266 922.2 811 58.3
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 3.5e-266 921.8 767 61.5
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.3e-265 919.8 766 61.2
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.3e-265 919.8 765 61.3
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.9e-264 916.0 768 61.6
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.9e-264 916.0 737 63.9
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 3.3e-264 915.2 765 61.3
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 5.7e-264 914.4 768 61.5
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.2e-263 912.5 809 58.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 5.9e-261 904.4 770 60.6
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 7.7e-261 904.0 781 58.8
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.9e-259 899.4 772 61.0
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.8e-255 884.8 754 60.6
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.9e-251 872.8 784 58.8
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.5e-251 872.5 778 59.1
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.2e-250 870.2 777 57.8
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.1e-249 864.8 771 58.2
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.7e-247 859.8 778 57.5
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 8.2e-247 857.4 776 57.3
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 3.1e-246 855.5 767 58.7
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.2e-245 853.6 780 58.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.1e-240 837.0 778 56.3
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.2e-239 832.8 773 58.1
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 2.8e-239 832.4 773 58.2
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.1e-238 830.5 850 53.8
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.4e-238 830.1 783 56.3
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 5.3e-238 828.2 767 56.3
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 7.7e-237 824.3 729 60.4
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.3e-236 823.5 772 55.3
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.3e-236 823.5 775 55.9
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 3.8e-236 822.0 713 59.6
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.7e-234 815.8 765 56.9
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 7.2e-227 791.2 743 56.8
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 7.0e-206 721.5 680 56.8
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 3.5e-205 719.2 699 55.2
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 1.1e-187 661.0 783 47.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.6e-173 612.5 764 45.7
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.5e-171 607.4 741 44.9
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 5.6e-171 605.5 747 44.4
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 2.8e-170 603.2 787 44.9
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 4.5e-168 595.9 762 43.7
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 5.5e-158 562.4 435 64.6
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.6e-152 543.5 418 65.3
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 3.8e-151 539.7 741 41.4
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.6e-149 534.3 406 65.8
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.6e-149 534.3 406 65.8
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.0e-135 488.4 396 61.9
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.0e-127 461.8 545 46.8
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 8.0e-125 452.2 263 78.7
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.3e-108 397.5 459 49.9
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.2e-107 395.2 252 74.6
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-102 377.9 439 45.6
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.7e-98 364.8 752 35.0
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.5e-67 261.9 762 29.4
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.4e-67 260.8 279 50.5
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 9.9e-59 232.6 288 46.5
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.4e-57 228.0 187 56.7
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.2e-42 178.3 152 60.5
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.1e-39 167.2 93 78.5
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.2e-32 146.0 149 53.7
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.0e-31 141.4 76 81.6
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-25 122.5 172 40.1
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.3e-22 111.3 142 40.1
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 3.0e-15 88.2 66 65.2
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.6e-11 75.1 101 40.6
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.8e-10 71.2 47 70.2
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.1e-09 69.7 40 75.0
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 3.2e-09 68.2 73 42.5


User provided reference genes

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