Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 7.8e-35 150.2 93 100.0
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 3.9e-18 94.7 95 71.6
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.7e-16 87.8 89 73.0
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.1e-15 86.7 80 72.5
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.1e-15 86.7 80 72.5
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.0e-15 84.7 93 64.5
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 8.9e-15 83.6 79 73.4
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.4e-14 81.6 75 76.0
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 4.4e-14 81.3 84 67.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 4.4e-14 81.3 76 73.7
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 5.8e-14 80.9 83 66.3
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 5.8e-14 80.9 92 64.1
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 7.6e-14 80.5 82 69.5
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 7.6e-14 80.5 92 66.3
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 9.9e-14 80.1 89 64.0
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 9.9e-14 80.1 87 65.5
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.3e-13 79.7 89 66.3
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.3e-13 79.7 89 65.2
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.7e-13 79.3 84 66.7
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.7e-13 79.3 80 68.8
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 2.9e-13 78.6 89 66.3
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.8e-13 78.2 81 66.7
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 3.8e-13 78.2 89 65.2
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.9e-13 77.8 94 63.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 4.9e-13 77.8 78 69.2
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 6.4e-13 77.4 81 64.2
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.1e-12 76.6 74 70.3
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.1e-12 76.6 92 65.2
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.9e-12 75.9 82 67.1
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.9e-12 75.9 84 67.9
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.9e-12 75.9 80 71.2
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 2.4e-12 75.5 86 60.5
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 2.4e-12 75.5 84 64.3
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 2.4e-12 75.5 97 61.9
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.2e-12 75.1 74 73.0
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.2e-12 75.1 88 63.6
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.2e-12 75.1 90 62.2
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 7.1e-12 73.9 94 63.8
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.2e-11 73.2 88 62.5
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 1.6e-11 72.8 58 69.0
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.6e-11 72.8 88 62.5
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 2.1e-11 72.4 78 67.9
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 2.1e-11 72.4 76 71.1
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.7e-11 72.0 88 61.4
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 3.5e-11 71.6 84 66.7
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 4.6e-11 71.2 88 62.5
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 4.6e-11 71.2 88 62.5
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 4.6e-11 71.2 77 48.1
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.8e-11 70.5 56 57.1
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 7.8e-11 70.5 88 60.2
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.0e-10 70.1 89 60.7
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.0e-10 70.1 93 60.2
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.0e-10 70.1 84 60.7
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.0e-10 70.1 83 66.3
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.3e-10 69.7 73 67.1
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.7e-10 69.3 75 65.3
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.7e-10 69.3 89 58.4
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.3e-10 68.9 86 61.6
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 3.0e-10 68.6 88 60.2
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 3.0e-10 68.6 80 62.5
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 6.6e-10 67.4 91 57.1
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 8.7e-10 67.0 85 64.7
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.5e-09 66.2 92 59.8
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.5e-09 66.2 83 66.3
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.9e-09 65.9 93 59.1
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 3.3e-09 65.1 88 59.1
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 3.3e-09 65.1 91 57.1
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 3.3e-09 65.1 81 44.4
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.3e-09 64.7 78 61.5
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.6e-09 64.3 86 54.7
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 5.6e-09 64.3 85 56.5
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 5.6e-09 64.3 85 56.5
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 5.6e-09 64.3 84 59.5
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 9.6e-09 63.5 80 65.0
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 9.6e-09 63.5 76 44.7
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 9.6e-09 63.5 84 56.0
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.3e-08 63.2 81 39.5
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.3e-08 63.2 88 60.2
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.3e-08 63.2 75 61.3
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.3e-08 63.2 71 62.0
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.3e-08 63.2 49 61.2
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.6e-08 62.8 86 57.0
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.6e-08 62.8 81 60.5
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 1.6e-08 62.8 74 62.2
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 2.1e-08 62.4 86 59.3
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 2.8e-08 62.0 86 54.7
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.8e-08 62.0 86 54.7
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 3.6e-08 61.6 84 69.0
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.6e-08 61.6 86 51.2
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 3.6e-08 61.6 85 55.3
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 4.8e-08 61.2 92 62.0
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.2e-08 60.8 87 40.2
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 6.2e-08 60.8 86 53.5
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 8.1e-08 60.5 48 62.5
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.1e-08 60.5 85 54.1
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 1.1e-07 60.1 81 42.0
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.1e-07 60.1 87 56.3
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.1e-07 60.1 63 49.2
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.1e-07 60.1 87 60.9
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-07 59.7 62 51.6
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.4e-07 59.7 82 57.3
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.8e-07 59.3 76 60.5
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.4e-07 58.9 71 45.1
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.4e-07 58.9 90 40.0
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.4e-07 58.9 62 56.5
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.4e-07 58.9 72 63.9
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.4e-07 58.9 74 62.2
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.1e-07 58.5 84 61.9
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 3.1e-07 58.5 50 60.0
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.1e-07 58.5 73 63.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 4.0e-07 58.2 74 45.9
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 4.0e-07 58.2 62 50.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 4.0e-07 58.2 62 50.0
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 4.0e-07 58.2 86 60.5
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 4.0e-07 58.2 77 58.4
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 4.0e-07 58.2 84 40.5
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 6.9e-07 57.4 77 58.4
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 9.0e-07 57.0 82 58.5
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.2e-06 56.6 75 60.0
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.2e-06 56.6 40 65.0
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.5e-06 56.2 66 42.4
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.5e-06 56.2 84 57.1
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 1.5e-06 56.2 81 37.0
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 2.0e-06 55.8 42 64.3
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 2.6e-06 55.5 82 58.5
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 3.4e-06 55.1 77 57.1
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 4.4e-06 54.7 85 57.6
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 4.4e-06 54.7 78 34.6
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 4.4e-06 54.7 82 57.3
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.6e-06 53.9 79 40.5
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.6e-06 53.9 75 41.3


User provided reference genes

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