Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 4.9e-307 1057.0 536 100.0
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 5.0e-227 791.2 513 75.4
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.8e-224 782.7 525 73.5
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 6.3e-222 774.2 531 72.5
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 4.1e-221 771.5 534 72.5
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.5e-220 768.5 513 73.5
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 5.9e-220 767.7 540 72.0
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.5e-218 763.1 514 73.9
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 4.3e-218 761.5 516 74.0
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 6.8e-216 754.2 532 72.4
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.1e-213 746.9 502 73.9
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.4e-213 746.5 529 72.4
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.4e-213 746.5 515 72.8
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.4e-213 745.7 516 71.7
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 4.1e-213 745.0 529 69.4
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.1e-213 745.0 536 69.4
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.2e-212 743.4 519 71.9
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.6e-212 743.0 529 69.2
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.6e-212 743.0 518 69.7
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.7e-212 742.3 529 70.5
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.3e-211 739.2 512 71.9
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 6.6e-211 737.6 530 68.3
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.1e-210 736.9 515 70.1
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.9e-210 736.1 529 69.9
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.9e-210 736.1 515 69.5
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.1e-209 732.6 518 70.1
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 3.6e-209 731.9 515 68.9
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 6.2e-209 731.1 513 71.9
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 6.2e-209 731.1 587 63.9
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 2.3e-208 729.2 515 70.7
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 4.0e-208 728.4 515 69.5
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 2.0e-207 726.1 530 68.9
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 3.4e-207 725.3 513 70.2
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 3.4e-207 725.3 530 68.9
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.8e-207 724.5 530 67.9
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 5.8e-207 724.5 515 68.3
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.3e-206 723.4 533 67.7
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.2e-206 722.6 514 68.5
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 8.3e-206 720.7 519 68.4
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 9.2e-205 717.2 518 68.9
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 4.6e-204 714.9 515 68.7
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 1.0e-203 713.8 515 68.3
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.7e-203 713.0 547 66.7
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 6.6e-203 711.1 535 66.9
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.9e-202 709.5 515 68.2
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.9e-202 709.5 535 66.7
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.3e-202 708.8 532 66.9
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 5.6e-202 708.0 517 68.1
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.1e-200 703.7 516 68.2
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 6.8e-200 701.0 529 67.1
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 7.5e-199 697.6 514 67.5
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 4.9e-198 694.9 472 72.5
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 8.3e-198 694.1 511 67.3
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 9.2e-197 690.6 537 64.6
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 9.2e-197 690.6 482 70.1
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 4.6e-196 688.3 521 68.5
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 7.8e-196 687.6 493 69.8
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 1.6e-193 679.9 505 69.1
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 2.1e-193 679.5 473 71.7
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 4.0e-192 675.2 485 70.3
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 9.2e-189 664.1 515 66.8
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 1.2e-188 663.7 619 56.2
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 7.8e-188 661.0 630 55.7
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.0e-187 659.1 509 68.4
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.9e-187 658.7 518 64.1
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.1e-184 649.0 515 64.1
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 3.1e-184 649.0 521 64.1
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.6e-183 646.0 443 70.9
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 7.6e-183 644.4 524 63.5
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.3e-182 643.7 524 63.4
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.2e-181 639.0 525 64.2
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 9.3e-181 637.5 526 64.8
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.9e-179 632.1 539 61.6
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 1.8e-176 623.2 582 60.0
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.6e-175 619.4 453 68.2
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 7.6e-175 617.8 483 65.6
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 2.2e-174 616.3 525 60.8
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 3.2e-173 612.5 464 67.5
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.0e-171 607.4 426 72.3
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.8e-171 606.7 439 70.4
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 9.6e-170 600.9 424 70.3
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.8e-169 599.4 523 60.8
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 3.2e-165 585.9 404 71.0
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 4.2e-165 585.5 489 61.8
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 6.0e-164 581.6 446 67.7
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 3.3e-162 575.9 418 69.4
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.6e-161 573.5 561 55.8
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 8.1e-161 571.2 511 58.5
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 2.9e-158 562.8 530 55.5
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 2.1e-156 556.6 424 68.2
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 2.7e-156 556.2 446 64.3
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.4e-152 543.9 490 56.9
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 2.0e-151 540.0 559 53.1
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.6e-151 538.1 386 69.9
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 3.3e-146 522.7 464 56.5
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.1e-144 516.2 437 61.3
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.2e-141 506.1 464 56.7
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.4e-139 500.7 426 63.4
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 9.7e-138 494.6 473 56.4
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 6.9e-136 488.4 473 55.8
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 5.0e-134 482.3 390 64.6
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-129 467.6 377 63.1
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.0e-119 433.7 390 61.0
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 2.2e-118 430.3 526 45.1
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 9.4e-117 424.9 307 69.7
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.0e-115 419.9 300 69.3
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.5e-114 417.5 475 47.6
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 5.4e-112 409.1 334 62.9
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 7.5e-106 388.7 502 44.0
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-98 364.4 316 62.7
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.8e-92 343.6 436 45.0
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 4.7e-92 342.8 252 67.1
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 2.7e-87 327.0 385 51.7
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 9.5e-85 318.5 214 74.3
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 5.8e-82 309.3 263 60.5
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.5e-77 293.9 462 40.7
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 3.1e-67 260.4 188 68.1
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 4.0e-67 260.0 187 72.2
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.5e-66 258.1 191 65.4
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.8e-66 256.1 426 38.0
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 8.4e-65 252.3 217 62.7
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 6.2e-60 236.1 590 31.7
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 7.1e-56 222.6 162 64.2
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.8e-52 210.7 198 56.1
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 4.6e-47 193.4 189 54.0
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.2e-42 178.7 514 30.9
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.6e-39 168.3 150 55.3
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 8.7e-38 162.5 162 55.6
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 5.3e-35 153.3 92 82.6
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 2.2e-33 147.9 162 48.1
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 4.2e-32 143.7 96 66.7
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.8e-30 138.3 504 27.6
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.3e-30 137.9 140 46.4
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.5e-29 134.4 146 50.7
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.5e-29 134.4 146 50.7
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.4e-29 132.9 110 66.4
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.8e-28 131.0 97 66.0
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.8e-25 120.6 78 70.5
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 8.5e-25 119.4 92 66.3
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.9e-24 118.2 86 64.0
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.1e-21 109.0 89 62.9
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.4e-19 101.3 67 71.6
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 7.7e-18 96.3 66 72.7
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.9e-16 91.7 55 80.0
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.2e-16 90.9 90 45.6
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.5e-16 90.1 58 75.9
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.5e-16 90.1 58 75.9
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 8.0e-15 86.3 74 63.5
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.4e-14 85.5 241 32.0
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 8.2e-12 76.3 55 65.5
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.4e-11 75.5 54 72.2
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.8e-11 75.1 61 50.8
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 8.0e-07 59.7 186 29.6


User provided reference genes

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