Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0000220 Simmondsia chinensis HOM05D002205 ORTHO05D008905 3.3e-43 177.9 89 100.0
Atru.chr1.3735 Acer truncatum HOM05D002205 ORTHO05D008905 1.7e-26 122.5 81 70.4
AT3G13800 Arabidopsis thaliana HOM05D002205 ORTHO05D008905 4.8e-26 120.9 85 68.2
Ciclev10025974m.g Citrus clementina HOM05D002205 ORTHO05D008905 8.3e-26 120.2 80 72.5
Sabra03G0023600 Salix brachista HOM05D001215 ORTHO05D003146 1.8e-25 119.0 82 69.5
AL3G25940 Arabidopsis lyrata HOM05D002205 ORTHO05D008905 2.4e-25 118.6 80 70.0
Hund18709 Selenicereus undatus HOM05D002205 ORTHO05D008905 5.3e-25 117.5 81 71.6
arahy.Tifrunner.gnm1.ann1.0N86HX Arachis hypogaea HOM05D002205 ORTHO05D008905 7.0e-25 117.1 81 69.1
arahy.Tifrunner.gnm1.ann1.7K23LZ Arachis hypogaea HOM05D002205 ORTHO05D008905 7.0e-25 117.1 81 69.1
Duzib235G0548 Durio zibethinus HOM05D002205 ORTHO05D008905 7.0e-25 117.1 80 71.2
SGA_v2.0_scaffold122G33371 Striga asiatica HOM05D002205 ORTHO05D008905 1.6e-24 115.9 84 66.7
CARHR088570 Cardamine hirsuta HOM05D002205 ORTHO05D008905 2.0e-24 115.5 85 65.9
CsaV3_3G043800 Cucumis sativus L. HOM05D002205 ORTHO05D008905 5.9e-24 114.0 83 66.3
MBI01_g20336_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D008905 5.9e-24 114.0 84 66.7
Sp3g12030 Schrenkiella parvula HOM05D002205 ORTHO05D008905 5.9e-24 114.0 80 67.5
THA.LOC104815641 Tarenaya hassleriana HOM05D002205 ORTHO05D008905 7.7e-24 113.6 80 68.8
TAR624G0974 Trochodendron aralioides HOM05D002205 ORTHO05D008905 7.7e-24 113.6 81 66.7
HanXRQChr09g0276551 Helianthus annuus HOM05D002205 ORTHO05D008905 1.0e-23 113.2 71 76.1
Cpa.g.sc25.47 Carica papaya HOM05D002205 ORTHO05D008905 1.3e-23 112.8 78 70.5
Eucgr.F03136 Eucalyptus grandis HOM05D002205 ORTHO05D008905 1.3e-23 112.8 84 67.9
Thhalv10021012m.g Eutrema salsugineum HOM05D002205 ORTHO05D008905 1.3e-23 112.8 77 68.8
Gohir.A10G058900 Gossypium hirsutum HOM05D002205 ORTHO05D008905 1.3e-23 112.8 85 65.9
Gorai.011G064800 Gossypium raimondii HOM05D002205 ORTHO05D008905 1.3e-23 112.8 85 65.9
PGR031G3692 Punica granatum HOM05D002205 ORTHO05D008905 1.3e-23 112.8 87 66.7
VMungo0331G1241 Vigna mungo HOM05D002205 ORTHO05D008905 1.3e-23 112.8 84 61.9
EL10Ac4g09462 Beta vulgaris HOM05D002205 ORTHO05D008905 1.7e-23 112.5 86 68.6
Hma1.2p1_0388F.1_g142440 Hydrangea macrophylla HOM05D002205 ORTHO05D008905 1.7e-23 112.5 85 67.1
Hma1.2p1_2617F.1_g325510 Hydrangea macrophylla HOM05D002205 ORTHO05D008905 1.7e-23 112.5 85 67.1
COL.COLO4_30666 Corchorus olitorius HOM05D002205 ORTHO05D008905 2.2e-23 112.1 68 76.5
MELO3C013096.2 Cucumis melo HOM05D002205 ORTHO05D008905 2.2e-23 112.1 81 66.7
Gohir.D10G060500 Gossypium hirsutum HOM05D002205 ORTHO05D008905 2.9e-23 111.7 85 64.7
Potri.003G036800 Populus trichocarpa HOM05D002205 ORTHO05D008905 2.9e-23 111.7 68 75.0
CiPaw.01G224100 Carya illinoinensis HOM05D002205 ORTHO05D008905 3.8e-23 111.3 85 63.5
CSS0010002 Camellia sinensis var. sinensis HOM05D002205 ORTHO05D008905 5.0e-23 110.9 85 63.5
Carub.0003s1335 Capsella rubella HOM05D002205 ORTHO05D008905 5.0e-23 110.9 85 62.4
Nn8g38823 Nelumbo nucifera HOM05D002205 ORTHO05D008905 5.0e-23 110.9 85 61.2
Phvul.010G138100 Phaseolus vulgaris HOM05D002205 ORTHO05D008905 5.0e-23 110.9 78 65.4
Aa31LG8G990 Aethionema arabicum HOM05D002205 ORTHO05D008905 6.5e-23 110.5 80 65.0
BcaB04g18799 Brassica carinata HOM05D002205 ORTHO05D008905 6.5e-23 110.5 77 68.8
MSTRG.22575 Avicennia marina HOM05D002205 ORTHO05D008905 8.5e-23 110.2 85 62.4
GSVIVG01016868001 Vitis vinifera HOM05D002205 ORTHO05D008905 8.5e-23 110.2 85 63.5
AUR62038144 Chenopodium quinoa HOM05D002205 ORTHO05D008905 1.1e-22 109.8 83 66.3
Haze_15964 Corylus avellana HOM05D002205 ORTHO05D008905 1.1e-22 109.8 68 73.5
Migut.I01033 Erythranthe guttata HOM05D002205 ORTHO05D008905 1.1e-22 109.8 86 59.3
Manes.04G140400 Manihot esculenta HOM05D002205 ORTHO05D008905 1.1e-22 109.8 83 63.9
Os09g0363800 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D008905 1.1e-22 109.8 69 71.0
Sed0015267 Sechium edule HOM05D002205 ORTHO05D008905 1.1e-22 109.8 85 64.7
QL05p012040 Quercus lobata HOM05D002205 ORTHO05D008905 1.5e-22 109.4 84 65.5
RcHm_v2.0_Chr2g0143471 Rosa chinensis HOM05D002205 ORTHO05D008905 1.5e-22 109.4 81 63.0
SalBow6G3596 Salvia bowleyana HOM05D002205 ORTHO05D008905 1.5e-22 109.4 71 71.8
SalBow6G5784 Salvia bowleyana HOM05D002205 ORTHO05D008905 1.5e-22 109.4 79 65.8
AUR62009832 Chenopodium quinoa HOM05D002205 ORTHO05D008905 2.5e-22 108.6 83 65.1
Haze_15966 Corylus avellana HOM05D002205 ORTHO05D008905 2.5e-22 108.6 67 74.6
vmacro18779 Vaccinium macrocarpon HOM05D002205 ORTHO05D008905 2.5e-22 108.6 68 75.0
PSO210G6809 Papaver somniferum HOM05D002205 ORTHO05D008905 3.2e-22 108.2 71 70.4
Prupe.3G048500 Prunus persica HOM05D002205 ORTHO05D008905 3.2e-22 108.2 85 62.4
Actinidia21768 Actinidia chinensis HOM05D002205 ORTHO05D008905 4.2e-22 107.8 82 63.4
Aqoxy7G04021 Aquilegia oxysepala HOM05D002205 ORTHO05D008905 4.2e-22 107.8 81 63.0
Lalb_Chr01g0013431 Lupinus albus HOM05D002205 ORTHO05D008905 4.2e-22 107.8 68 72.1
CANSAT56G3898 Cannabis sativa HOM05D002205 ORTHO05D008905 5.5e-22 107.5 68 73.5
BcaC01g03974 Brassica carinata HOM05D002205 ORTHO05D008905 7.2e-22 107.1 81 64.2
C03p46600 Brassica napus HOM05D002205 ORTHO05D008905 7.2e-22 107.1 81 64.2
BolC3t16923H Brassica oleracea HOM05D002205 ORTHO05D008905 7.2e-22 107.1 81 64.2
ECA232G1049 Erigeron canadensis HOM05D002205 ORTHO05D008905 7.2e-22 107.1 71 73.2
FAN09G2611 Fragaria x ananassa HOM05D002205 ORTHO05D008905 7.2e-22 107.1 84 61.9
MD09G1192200 Malus domestica HOM05D002205 ORTHO05D008905 7.2e-22 107.1 83 62.7
A03p38420 Brassica napus HOM05D002205 ORTHO05D008905 9.4e-22 106.7 68 72.1
BraA03t12994Z Brassica rapa HOM05D002205 ORTHO05D008905 9.4e-22 106.7 68 72.1
Cc04_g01860 Coffea canephora HOM05D002205 ORTHO05D008905 9.4e-22 106.7 80 60.0
Nitab4.5_0012068g0010 Nicotiana tabacum HOM05D002205 ORTHO05D008905 9.4e-22 106.7 68 72.1
Rhsim08G0234400 Rhododendron simsii HOM05D002205 ORTHO05D008905 9.4e-22 106.7 84 63.1
Dinv30371 Davidia involucrata HOM05D002205 ORTHO05D008905 1.2e-21 106.3 85 63.5
Nitab4.5_0001295g0270 Nicotiana tabacum HOM05D002205 ORTHO05D008905 1.2e-21 106.3 81 63.0
HPP92_009142 Vanilla planifolia HOM05D002205 ORTHO05D008905 1.6e-21 105.9 77 62.3
CAN.G1389.29 Capsicum annuum HOM05D002205 ORTHO05D008905 2.1e-21 105.5 84 63.1
FvH4_6g33560 Fragaria vesca HOM05D002205 ORTHO05D008905 2.1e-21 105.5 85 58.8
ATR0789G064 Amborella trichopoda HOM05D002205 ORTHO05D008905 2.7e-21 105.1 69 71.0
FAN02G0247 Fragaria x ananassa HOM05D002205 ORTHO05D008905 2.7e-21 105.1 84 60.7
Lj3g0021915 Lotus japonicus HOM05D002205 ORTHO05D008905 3.6e-21 104.8 73 67.1
Peaxi162Scf00038g00169 Petunia axillaris HOM05D002205 ORTHO05D008905 3.6e-21 104.8 71 69.0
FAN14G0293 Fragaria x ananassa HOM05D002205 ORTHO05D008905 4.7e-21 104.4 84 59.5
Medtr8g017270 Medicago truncatula HOM05D002205 ORTHO05D008905 8.0e-21 103.6 81 60.5
Solyc03g121670.4 Solanum lycopersicum HOM05D002205 ORTHO05D008905 8.0e-21 103.6 86 61.6
DCAR_016151 Daucus carota HOM05D002205 ORTHO05D008905 1.0e-20 103.2 84 58.3
Lj5A43G71 Lonicera japonica HOM05D002205 ORTHO05D008905 1.8e-20 102.4 68 70.6
Psat4g188120 Pisum sativum HOM05D002205 ORTHO05D008905 1.8e-20 102.4 68 69.1
Zm00001eb311000 Zea mays HOM05D002205 ORTHO05D008905 1.8e-20 102.4 68 67.6
ClCG07G013800 Citrullus lanatus HOM05D002205 ORTHO05D008905 2.3e-20 102.1 62 77.4
Glyma.08G192200 Glycine max HOM05D002205 ORTHO05D008905 3.0e-20 101.7 69 69.6
Sopen03g040480 Solanum pennellii HOM05D002205 ORTHO05D008905 3.0e-20 101.7 86 60.5
TWI79G0068 Tripterygium wilfordii HOM05D002205 ORTHO05D008905 4.0e-20 101.3 78 61.5
SEGI_33002 Sequoiadendron giganteum HOM05D002205 ORTHO05D008905 5.2e-20 100.9 74 62.2
PGSC0003DMG400002494 Solanum tuberosum HOM05D002205 ORTHO05D008905 5.2e-20 100.9 81 61.7
MD17G1186100 Malus domestica HOM05D002205 ORTHO05D008905 8.8e-20 100.1 83 59.0
FAN05G0593 Fragaria x ananassa HOM05D002205 ORTHO05D008905 1.2e-19 99.8 84 58.3
Glyma.07G009000 Glycine max HOM05D002205 ORTHO05D008905 2.0e-19 99.0 79 63.3
Lsat_1_v5_gn_4_94401 Lactuca sativa HOM05D002205 ORTHO05D008905 2.6e-19 98.6 68 69.1
Manes.11G025500 Manihot esculenta HOM05D002205 ORTHO05D008905 4.4e-19 97.8 62 71.0
AagrBONN_evm.TU.Sc2ySwM_228.3237 Anthoceros agrestis HOM05D002205 ORTHO05D008905 5.7e-19 97.4 87 52.9
TPR.G19298 Trifolium pratense HOM05D002205 ORTHO05D008905 2.2e-18 95.5 66 65.2
Pp3c2_540 Physcomitrium patens HOM05D002205 ORTHO05D008905 1.4e-17 92.8 68 64.7
arahy.Tifrunner.gnm1.ann1.Z9C7LK Arachis hypogaea HOM05D002205 ORTHO05D008905 4.1e-17 91.3 67 68.7
Mapoly0019s0105 Marchantia polymorpha HOM05D002205 ORTHO05D008905 9.1e-17 90.1 87 52.9
SMO364G0714 Selaginella moellendorffii HOM05D002205 ORTHO05D008905 3.5e-16 88.2 67 59.7
SalBow1G1864 Salvia bowleyana HOM05D002205 ORTHO05D002629 2.7e-08 62.0 45 66.7
SalBow1G5538 Salvia bowleyana HOM05D002205 ORTHO05D002629 2.7e-08 62.0 45 66.7
TPR.G26265 Trifolium pratense HOM05D002205 ORTHO05D004847 1.1e-06 56.6 69 50.7
Prupe.4G085600 Prunus persica HOM05D002205 ORTHO05D004847 1.9e-06 55.8 83 42.2
VMungo0251G0380 Vigna mungo HOM05D002205 ORTHO05D004847 1.9e-06 55.8 77 39.0
Aqoxy1G01658 Aquilegia oxysepala HOM05D002205 ORTHO05D004847 2.5e-06 55.5 76 43.4
Medtr2g018660 Medicago truncatula HOM05D002205 ORTHO05D004847 3.3e-06 55.1 77 45.5
TPR.G29295 Trifolium pratense HOM05D002205 ORTHO05D008905 3.3e-06 55.1 39 61.5
Lj6g0014068 Lotus japonicus HOM05D002205 ORTHO05D004847 4.3e-06 54.7 90 42.2
MBI18_g11219_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D004847 4.3e-06 54.7 77 41.6
MD05G1279500 Malus domestica HOM05D002205 ORTHO05D004847 4.3e-06 54.7 71 42.3
Nitab4.5_0000315g0040 Nicotiana tabacum HOM05D002205 ORTHO05D004847 4.3e-06 54.7 80 43.8
Sc05g0005980 Simmondsia chinensis HOM05D002205 ORTHO05D004847 4.3e-06 54.7 77 42.9
Dinv21519 Davidia involucrata HOM05D002205 ORTHO05D004847 5.6e-06 54.3 87 40.2
ATR1098G096 Amborella trichopoda HOM05D002205 ORTHO05D004847 7.3e-06 53.9 87 40.2


User provided reference genes

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