Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0009270 Simmondsia chinensis HOM05D002000 ORTHO05D002027 1.8e-43 178.7 84 100.0
AUR62026810 Chenopodium quinoa HOM05D002000 ORTHO05D002027 1.8e-14 82.4 79 49.4
GSVIVG01000861001 Vitis vinifera HOM05D002000 ORTHO05D002027 2.4e-14 82.0 77 51.9
AUR62037243 Chenopodium quinoa HOM05D002000 ORTHO05D002027 8.9e-14 80.1 79 49.4
Hund15705 Selenicereus undatus HOM05D002000 ORTHO05D002027 2.6e-13 78.6 79 46.8
Sc11g0006770 Simmondsia chinensis HOM05D002000 ORTHO05D002027 4.4e-13 77.8 77 50.6
Actinidia17678 Actinidia chinensis HOM05D002000 ORTHO05D002027 2.9e-12 75.1 75 46.7
Ah.10g030930 Amaranthus hybridus HOM05D002000 ORTHO05D002027 6.4e-12 73.9 79 46.8
Actinidia38143 Actinidia chinensis HOM05D002000 ORTHO05D002027 1.4e-11 72.8 75 45.3
Nn3g19988 Nelumbo nucifera HOM05D002000 ORTHO05D002027 1.9e-11 72.4 85 42.4
CsaV3_3G040870 Cucumis sativus L. HOM05D002000 ORTHO05D002027 4.1e-11 71.2 78 42.3
Potri.016G041900 Populus trichocarpa HOM05D002000 ORTHO05D002027 5.4e-11 70.9 80 42.5
TAR636G1876 Trochodendron aralioides HOM05D002000 ORTHO05D002027 5.4e-11 70.9 78 44.9
EL10Ac2g02874 Beta vulgaris HOM05D002000 ORTHO05D002027 9.2e-11 70.1 83 42.2
Sabra16G0047600 Salix brachista HOM05D002000 ORTHO05D002027 9.2e-11 70.1 80 42.5
Manes.09G016100 Manihot esculenta HOM05D002000 ORTHO05D002027 1.2e-10 69.7 79 40.5
Peaxi162Scf00071g00940 Petunia axillaris HOM05D002000 ORTHO05D002027 1.2e-10 69.7 77 44.2
RcHm_v2.0_Chr3g0484541 Rosa chinensis HOM05D002000 ORTHO05D002027 1.2e-10 69.7 79 41.8
MELO3C009822.2 Cucumis melo HOM05D002000 ORTHO05D002027 1.6e-10 69.3 78 41.0
ClCG10G015560 Citrullus lanatus HOM05D002000 ORTHO05D002027 2.1e-10 68.9 78 41.0
Oeu027348.1 Olea europaea HOM05D002000 ORTHO05D002027 2.1e-10 68.9 83 47.0
Rhsim01G0123200 Rhododendron simsii HOM05D002000 ORTHO05D002027 3.5e-10 68.2 79 48.1
Eucgr.G03264 Eucalyptus grandis HOM05D002000 ORTHO05D002027 4.6e-10 67.8 86 43.0
Eucgr.L03186 Eucalyptus grandis HOM05D002000 ORTHO05D002027 4.6e-10 67.8 86 43.0
CANSAT80G1077 Cannabis sativa HOM05D002000 ORTHO05D002027 7.8e-10 67.0 79 41.8
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.3e-09 66.2 84 47.6
Nn1g07876 Nelumbo nucifera HOM05D002000 ORTHO05D002027 1.7e-09 65.9 85 42.4
Rhsim04G0108000 Rhododendron simsii HOM05D002000 ORTHO05D002027 2.3e-09 65.5 78 44.9
Peaxi162Scf00087g00130 Petunia axillaris HOM05D002000 ORTHO05D002027 3.0e-09 65.1 81 45.7
TAR633G1029 Trochodendron aralioides HOM05D002000 ORTHO05D002027 3.0e-09 65.1 78 38.5
Atru.chr1.1241 Acer truncatum HOM05D002000 ORTHO05D002027 3.9e-09 64.7 80 41.2
Sed0019396 Sechium edule HOM05D002000 ORTHO05D002027 3.9e-09 64.7 79 40.5
Dinv18688 Davidia involucrata HOM05D002000 ORTHO05D002027 5.1e-09 64.3 81 40.7
CSS0030968 Camellia sinensis var. sinensis HOM05D002000 ORTHO05D002027 6.6e-09 63.9 88 39.8
Migut.B01197 Erythranthe guttata HOM05D002000 ORTHO05D002027 6.6e-09 63.9 81 42.0
Oeu009630.1 Olea europaea HOM05D002000 ORTHO05D002027 6.6e-09 63.9 83 42.2
QL07p005014 Quercus lobata HOM05D002000 ORTHO05D002027 6.6e-09 63.9 80 40.0
Cc09_g07770 Coffea canephora HOM05D002000 ORTHO05D002027 8.7e-09 63.5 83 45.8
Nitab4.5_0000082g0360 Nicotiana tabacum HOM05D002000 ORTHO05D002027 8.7e-09 63.5 94 40.4
Nitab4.5_0001543g0010 Nicotiana tabacum HOM05D002000 ORTHO05D002027 8.7e-09 63.5 84 46.4
Psat3g075240 Pisum sativum HOM05D002000 ORTHO05D002027 8.7e-09 63.5 79 39.2
TWI53G1821 Tripterygium wilfordii HOM05D002000 ORTHO05D002027 8.7e-09 63.5 76 40.8
SGA_v2.0_scaffold119G32789 Striga asiatica HOM05D002000 ORTHO05D002027 1.1e-08 63.2 83 44.6
Thecc.K0006500 Theobroma cacao HOM05D002000 ORTHO05D002027 1.1e-08 63.2 82 37.8
CANSAT80G0142 Cannabis sativa HOM05D002000 ORTHO05D002027 1.9e-08 62.4 79 44.3
Lj7C578G16 Lonicera japonica HOM05D002000 ORTHO05D002027 1.9e-08 62.4 82 43.9
Carub.0005s2402 Capsella rubella HOM05D002000 ORTHO05D002027 2.5e-08 62.0 83 39.8
MELO3C011732.2 Cucumis melo HOM05D002000 ORTHO05D002027 2.5e-08 62.0 81 40.7
MBI13_g04785_MAGBIO Magnolia biondii HOM05D002000 ORTHO05D002027 2.5e-08 62.0 82 37.8
PGSC0003DMG400006752 Solanum tuberosum HOM05D002000 ORTHO05D002027 2.5e-08 62.0 82 43.9
Dinv30295 Davidia involucrata HOM05D002000 ORTHO05D002027 3.3e-08 61.6 81 38.3
Gohir.D11G324700 Gossypium hirsutum HOM05D002000 ORTHO05D002027 3.3e-08 61.6 82 39.0
Gorai.007G355500 Gossypium raimondii HOM05D002000 ORTHO05D002027 3.3e-08 61.6 82 39.0
MD14G1080900 Malus domestica HOM05D002000 ORTHO05D002027 3.3e-08 61.6 83 36.1
TPR.G32751 Trifolium pratense HOM05D002000 ORTHO05D002027 3.3e-08 61.6 80 40.0
TAR369G1070 Trochodendron aralioides HOM05D002000 ORTHO05D002027 3.3e-08 61.6 81 37.0
Duzib106G0022 Durio zibethinus HOM05D002000 ORTHO05D002027 4.3e-08 61.2 87 34.5
Thhalv10006445m.g Eutrema salsugineum HOM05D002000 ORTHO05D002027 4.3e-08 61.2 88 37.5
MD12G1085800 Malus domestica HOM05D002000 ORTHO05D002027 4.3e-08 61.2 85 36.5
vmacro09043 Vaccinium macrocarpon HOM05D002000 ORTHO05D002027 4.3e-08 61.2 80 42.5
CiPaw.10G036700 Carya illinoinensis HOM05D002000 ORTHO05D002027 5.6e-08 60.8 85 37.6
PSO339G5901 Papaver somniferum HOM05D002000 ORTHO05D002027 5.6e-08 60.8 83 42.2
Solyc01g068200.4 Solanum lycopersicum HOM05D002000 ORTHO05D002027 5.6e-08 60.8 82 42.7
Sopen01g030140 Solanum pennellii HOM05D002000 ORTHO05D002027 5.6e-08 60.8 82 42.7
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 5.6e-08 60.8 88 38.6
TAR383G0681 Trochodendron aralioides HOM05D002000 ORTHO05D002027 5.6e-08 60.8 81 37.0
CiPaw.14G005300 Carya illinoinensis HOM05D002000 ORTHO05D002027 7.3e-08 60.5 86 39.5
Thhalv10007378m.g Eutrema salsugineum HOM05D002000 ORTHO05D002027 7.3e-08 60.5 83 38.6
Lsat_1_v5_gn_5_160741 Lactuca sativa HOM05D002000 ORTHO05D002027 7.3e-08 60.5 81 39.5
Cpa.g.sc120.11 Carica papaya HOM05D002000 ORTHO05D002027 9.6e-08 60.1 82 42.7
Dinv03573 Davidia involucrata HOM05D002000 ORTHO05D002027 9.6e-08 60.1 81 44.4
TWI74G1311 Tripterygium wilfordii HOM05D002000 ORTHO05D002027 9.6e-08 60.1 80 38.8
arahy.Tifrunner.gnm1.ann1.7Q1XW7 Arachis hypogaea HOM05D002000 ORTHO05D002027 1.2e-07 59.7 90 36.7
arahy.Tifrunner.gnm1.ann1.ZWX2MJ Arachis hypogaea HOM05D002000 ORTHO05D002027 1.2e-07 59.7 90 36.7
Prupe.7G049900 Prunus persica HOM05D002000 ORTHO05D002027 1.2e-07 59.7 80 38.8
Sed0011530 Sechium edule HOM05D002000 ORTHO05D002027 1.2e-07 59.7 84 39.3
AL5G38690 Arabidopsis lyrata HOM05D002000 ORTHO05D002027 1.6e-07 59.3 88 36.4
AT3G57200 Arabidopsis thaliana HOM05D002000 ORTHO05D002027 1.6e-07 59.3 88 36.4
Medtr7g090740 Medicago truncatula HOM05D002000 ORTHO05D002027 1.6e-07 59.3 80 37.5
PGR004G1746 Punica granatum HOM05D002000 ORTHO05D002027 1.6e-07 59.3 91 37.4
Sp5g05370 Schrenkiella parvula HOM05D002000 ORTHO05D002027 1.6e-07 59.3 82 39.0
Aa31LG10G12110 Aethionema arabicum HOM05D002000 ORTHO05D002027 2.1e-07 58.9 91 38.5
Aqoxy2G00264 Aquilegia oxysepala HOM05D002000 ORTHO05D002027 2.1e-07 58.9 82 40.2
FAN01G1457 Fragaria x ananassa HOM05D002000 ORTHO05D002027 2.1e-07 58.9 82 39.0
Lj1A1122G43 Lonicera japonica HOM05D002000 ORTHO05D002027 2.1e-07 58.9 77 40.3
Nitab4.5_0001249g0050 Nicotiana tabacum HOM05D002000 ORTHO05D002027 2.1e-07 58.9 92 38.0
Oeu014603.1 Olea europaea HOM05D002000 ORTHO05D002027 2.1e-07 58.9 85 41.2
Ca_08426_v3 Cicer arietinum L. HOM05D002000 ORTHO05D002027 2.8e-07 58.5 85 36.5
ClCG02G013930 Citrullus lanatus HOM05D002000 ORTHO05D002027 2.8e-07 58.5 81 39.5
FvH4_7g02090 Fragaria vesca HOM05D002000 ORTHO05D002027 2.8e-07 58.5 81 39.5
PGR031G1636 Punica granatum HOM05D002000 ORTHO05D002027 2.8e-07 58.5 80 37.5
Haze_19752 Corylus avellana HOM05D002000 ORTHO05D002027 3.6e-07 58.2 80 35.0
RcHm_v2.0_Chr1g0319411 Rosa chinensis HOM05D002000 ORTHO05D002027 3.6e-07 58.2 81 38.3
FAN03G0213 Fragaria x ananassa HOM05D002000 ORTHO05D002027 4.7e-07 57.8 81 39.5
FAN10G1593 Fragaria x ananassa HOM05D002000 ORTHO05D002027 4.7e-07 57.8 81 39.5
Gohir.A11G309300 Gossypium hirsutum HOM05D002000 ORTHO05D002027 4.7e-07 57.8 82 37.8
SalBow5G4462 Salvia bowleyana HOM05D002000 ORTHO05D002027 4.7e-07 57.8 82 42.7
HanXRQChr10g0298651 Helianthus annuus HOM05D002000 ORTHO05D002027 6.2e-07 57.4 82 40.2
QL04p013160 Quercus lobata HOM05D002000 ORTHO05D002027 6.2e-07 57.4 83 39.8
Solyc10g079210.2 Solanum lycopersicum HOM05D002000 ORTHO05D002027 6.2e-07 57.4 88 38.6
Sopen10g029860 Solanum pennellii HOM05D002000 ORTHO05D002027 6.2e-07 57.4 88 38.6
Actinidia06275 Actinidia chinensis HOM05D002000 ORTHO05D002027 8.1e-07 57.0 82 40.2
Lsat_1_v5_gn_9_31980 Lactuca sativa HOM05D002000 ORTHO05D002027 8.1e-07 57.0 82 39.0
PSO384G3800 Papaver somniferum HOM05D002000 ORTHO05D002027 8.1e-07 57.0 83 42.2
BcaC07g40065 Brassica carinata HOM05D002000 ORTHO05D002027 1.1e-06 56.6 85 41.2
CDE08G0996 Ceratophyllum demersum HOM05D002000 ORTHO05D002027 1.1e-06 56.6 85 36.5
DCAR_031821 Daucus carota HOM05D002000 ORTHO05D002027 1.1e-06 56.6 86 38.4
BcaNung06570 Brassica carinata HOM05D002000 ORTHO05D002027 1.4e-06 56.2 86 37.2
C08p32510 Brassica napus HOM05D002000 ORTHO05D002027 1.4e-06 56.2 86 37.2
BolC8t50866H Brassica oleracea HOM05D002000 ORTHO05D002027 1.4e-06 56.2 86 37.2
CsaV3_5G006220 Cucumis sativus L. HOM05D002000 ORTHO05D002027 1.4e-06 56.2 81 39.5
ECA248G1811 Erigeron canadensis HOM05D002000 ORTHO05D002027 1.4e-06 56.2 81 38.3
vmacro12685 Vaccinium macrocarpon HOM05D002000 ORTHO05D002027 1.4e-06 56.2 84 40.5
FAN06G2265 Fragaria x ananassa HOM05D002000 ORTHO05D002027 1.8e-06 55.8 81 38.3
ECA248G1138 Erigeron canadensis HOM05D000004 ORTHO05D002027 2.4e-06 55.5 81 43.2
Manes.08G053500 Manihot esculenta HOM05D002000 ORTHO05D002027 2.4e-06 55.5 86 36.0
A09p50140 Brassica napus HOM05D002000 ORTHO05D002027 3.1e-06 55.1 83 34.9
BraA09t40466Z Brassica rapa HOM05D002000 ORTHO05D002027 3.1e-06 55.1 83 34.9
Phvul.001G128300 Phaseolus vulgaris HOM05D002000 ORTHO05D002027 3.1e-06 55.1 80 37.5
Glyma.03G132300 Glycine max HOM05D002000 ORTHO05D002027 6.9e-06 53.9 82 34.1
TPR.G2748 Trifolium pratense HOM05D002000 ORTHO05D002027 6.9e-06 53.9 80 37.5
MSTRG.20543 Avicennia marina HOM05D002000 ORTHO05D002027 9.0e-06 53.5 82 37.8


User provided reference genes

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