Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 0.0e+00 1148.7 556 100.0
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 6.0e-215 751.1 501 71.3
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 7.8e-215 750.7 501 71.3
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 1.6e-212 743.0 461 75.1
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.6e-212 743.0 470 74.3
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 3.6e-212 741.9 464 75.2
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 5.2e-211 738.0 459 74.5
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 8.9e-211 737.3 493 72.2
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 1.2e-210 736.9 514 70.0
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 2.6e-210 735.7 527 68.3
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 4.4e-210 734.9 516 68.8
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 5.8e-210 734.6 468 72.0
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 1.7e-209 733.0 468 72.2
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.4e-208 729.9 498 71.3
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 1.4e-208 729.9 525 68.2
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 1.9e-208 729.6 505 70.3
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 4.1e-208 728.4 528 67.8
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.6e-207 726.5 456 75.4
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 1.0e-206 723.8 502 70.5
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.0e-206 722.2 446 74.9
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 3.9e-206 721.8 469 72.5
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.3e-205 718.8 457 74.0
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 5.6e-205 718.0 464 72.8
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 5.6e-205 718.0 477 71.9
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 1.2e-204 716.8 499 69.3
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 2.8e-204 715.7 463 72.6
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 2.8e-204 715.7 468 72.4
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.6e-204 715.3 534 67.2
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 4.7e-204 714.9 481 70.5
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 6.2e-204 714.5 484 69.4
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 6.2e-204 714.5 527 67.6
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 6.2e-204 714.5 479 71.4
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 1.8e-203 713.0 530 66.4
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.1e-203 712.2 484 69.2
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 5.2e-203 711.4 490 70.2
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 4.4e-202 708.4 498 69.9
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 7.6e-202 707.6 431 76.8
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 7.6e-202 707.6 510 68.6
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 7.6e-202 707.6 527 66.6
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 2.2e-201 706.1 461 71.4
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.9e-201 705.7 522 67.8
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.9e-200 703.0 502 68.1
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 4.1e-200 701.8 487 69.6
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 5.4e-200 701.4 500 68.8
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.2e-199 700.3 435 74.9
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 1.9e-197 693.0 513 67.1
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 4.3e-197 691.8 464 69.4
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 7.3e-197 691.0 480 67.3
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 7.3e-197 691.0 460 71.1
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 3.6e-196 688.7 501 66.9
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 3.6e-196 688.7 501 66.9
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 6.2e-196 688.0 501 66.5
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 6.2e-196 688.0 476 68.7
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 8.1e-196 687.6 458 69.9
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 1.1e-195 687.2 501 66.5
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 1.1e-195 687.2 470 68.7
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.8e-195 686.4 457 70.2
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 4.0e-195 685.3 458 69.7
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 8.9e-195 684.1 459 68.6
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 2.0e-194 682.9 519 64.5
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 7.6e-194 681.0 486 66.9
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 8.4e-193 677.6 432 74.1
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 1.9e-192 676.4 416 75.2
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 5.4e-192 674.9 501 66.1
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 7.1e-192 674.5 458 68.8
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 2.7e-191 672.5 500 65.2
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 7.8e-191 671.0 458 69.0
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 2.3e-190 669.5 491 66.4
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 1.9e-189 666.4 499 65.5
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 4.3e-189 665.2 479 67.6
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 5.6e-189 664.8 455 67.7
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 1.3e-188 663.7 481 66.9
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 1.6e-188 663.3 498 65.3
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 8.1e-188 661.0 516 63.6
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 8.1e-188 661.0 451 68.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.1e-187 660.6 424 74.5
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 1.8e-187 659.8 456 70.8
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 2.4e-187 659.4 501 64.5
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 9.0e-187 657.5 507 63.1
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 1.5e-186 656.8 466 68.2
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 2.0e-186 656.4 473 66.0
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 2.0e-186 656.4 462 68.8
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 2.0e-186 656.4 496 64.9
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 3.4e-186 655.6 468 65.4
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 5.8e-186 654.8 416 75.0
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.6e-183 646.7 482 64.5
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 3.0e-182 642.5 458 66.2
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 4.8e-180 635.2 419 72.6
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 5.5e-176 621.7 432 67.4
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 6.0e-175 618.2 466 61.6
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.5e-173 612.8 503 58.6
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 7.4e-173 611.3 423 69.0
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 2.1e-172 609.8 414 70.5
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 1.1e-163 580.9 387 71.3
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 7.6e-162 574.7 352 75.6
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 3.9e-142 509.2 457 53.4
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.1e-141 507.7 462 53.5
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 3.3e-141 506.1 456 53.5
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.2e-138 497.7 520 52.3
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 6.3e-132 475.3 370 61.9
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 4.5e-130 469.2 423 57.0
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 6.5e-129 465.3 542 43.2
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 3.0e-110 403.3 414 54.3
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.8e-103 380.2 302 61.9
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 1.2e-101 374.8 466 43.8
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.6e-98 364.4 444 43.9
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.0e-98 364.0 202 81.7
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 8.1e-95 352.1 343 56.0
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 8.6e-89 332.0 491 37.9
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 2.7e-82 310.5 183 76.0
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 1.2e-79 301.6 235 62.1
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 5.1e-73 279.6 450 37.1
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 9.9e-69 265.4 221 61.5
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 4.6e-66 256.5 150 76.7
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 8.7e-65 252.3 150 75.3
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 8.7e-65 252.3 215 56.7
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 8.1e-63 245.7 239 55.6
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.4e-43 181.8 420 32.4
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 3.6e-34 150.6 183 50.8
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 1.4e-17 95.5 78 61.5
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 4.0e-17 94.0 71 62.0
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.4e-14 85.5 92 47.8
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 2.0e-13 81.6 271 24.7
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.5e-13 80.5 269 24.5
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 5.9e-13 80.1 127 41.7
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.3e-12 79.0 269 24.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 2.9e-12 77.8 271 24.4
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.9e-12 77.8 49 71.4
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 6.5e-12 76.6 144 35.4
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.1e-11 75.9 269 24.2
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 4.2e-11 73.9 52 73.1
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 9.4e-11 72.8 277 24.2
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 2.1e-10 71.6 271 23.2
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.7e-10 71.2 272 23.2
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 6.1e-10 70.1 279 22.6
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.8e-09 68.6 160 23.8


User provided reference genes

Program Settings