Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 1.3e-103 379.8 207 100.0
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 1.6e-32 143.7 190 46.8
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 6.2e-32 141.7 205 46.3
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 8.0e-32 141.4 210 46.7
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 1.1e-31 141.0 213 42.7
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 1.8e-31 140.2 199 42.7
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 8.9e-31 137.9 198 43.9
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 2.9e-29 132.9 185 46.5
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 6.4e-29 131.7 209 41.1
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 5.4e-28 128.6 222 40.1
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 7.0e-28 128.3 186 42.5
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 2.3e-26 123.2 191 41.9
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 5.1e-26 122.1 221 40.3
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.9e-25 120.2 161 45.3
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.9e-25 120.2 200 40.5
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 3.3e-25 119.4 161 45.3
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 3.3e-25 119.4 198 40.9
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 4.3e-25 119.0 194 44.3
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 4.3e-25 119.0 179 41.9
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 5.6e-25 118.6 213 41.3
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 5.6e-25 118.6 188 41.5
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 7.3e-25 118.2 200 40.0
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 9.5e-25 117.9 178 38.2
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 9.5e-25 117.9 159 44.7
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 1.2e-24 117.5 196 39.3
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 2.1e-24 116.7 194 45.4
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 2.1e-24 116.7 203 38.9
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.8e-24 116.3 200 39.5
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 2.8e-24 116.3 234 35.9
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 6.2e-24 115.2 229 37.6
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.1e-23 114.4 189 41.3
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 1.1e-23 114.4 222 38.3
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.4e-23 114.0 198 40.4
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 2.3e-23 113.2 219 36.5
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 3.1e-23 112.8 200 40.0
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 3.1e-23 112.8 201 38.8
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 3.1e-23 112.8 184 41.3
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 3.1e-23 112.8 169 42.6
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 6.8e-23 111.7 183 39.9
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 8.9e-23 111.3 183 39.3
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 1.2e-22 110.9 237 36.3
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.0e-22 110.2 188 43.1
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.4e-22 109.4 183 39.3
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 3.4e-22 109.4 190 40.5
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 9.9e-22 107.8 192 42.2
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 9.9e-22 107.8 206 37.9
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.7e-21 107.1 192 38.0
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 2.2e-21 106.7 188 39.4
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.2e-21 106.7 185 37.3
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 2.9e-21 106.3 213 37.6
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 6.4e-21 105.1 192 37.5
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 6.4e-21 105.1 196 37.2
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 8.3e-21 104.8 151 42.4
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 1.1e-20 104.4 192 39.1
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 1.4e-20 104.0 206 38.8
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 1.9e-20 103.6 156 42.3
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 2.4e-20 103.2 151 41.7
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 5.4e-20 102.1 151 41.7
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 7.1e-20 101.7 151 41.7
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 7.1e-20 101.7 193 38.9
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 1.2e-19 100.9 186 36.6
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.2e-19 100.9 193 37.8
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 1.6e-19 100.5 151 43.7
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 1.6e-19 100.5 151 40.4
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 1.6e-19 100.5 151 40.4
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 1.6e-19 100.5 151 40.4
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.6e-19 100.5 200 35.5
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.6e-19 100.5 185 38.9
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.6e-19 100.5 189 39.7
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 2.7e-19 99.8 152 44.1
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 4.6e-19 99.0 195 37.4
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 6.0e-19 98.6 203 39.4
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 7.8e-19 98.2 154 40.9
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 7.8e-19 98.2 171 39.2
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 1.0e-18 97.8 188 37.2
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 3.0e-18 96.3 198 33.3
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 3.9e-18 95.9 152 40.8
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 5.1e-18 95.5 186 37.1
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 5.1e-18 95.5 190 35.3
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 1.1e-17 94.4 190 38.9
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.5e-17 93.2 166 40.4
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 3.3e-17 92.8 102 49.0
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 4.3e-17 92.4 102 51.0
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 7.3e-17 91.7 164 39.6
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 9.5e-17 91.3 151 39.7
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.2e-16 90.9 133 46.6
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.2e-16 90.9 117 47.0
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.2e-16 90.9 117 47.0
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 3.6e-16 89.4 151 38.4
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 4.7e-16 89.0 199 37.7
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 6.2e-16 88.6 194 35.6
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 6.2e-16 88.6 199 37.7
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 1.1e-15 87.8 117 45.3
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 1.1e-15 87.8 176 36.4
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 1.4e-15 87.4 133 42.1
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.8e-15 87.0 143 40.6
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 2.4e-15 86.7 189 37.0
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 4.0e-15 85.9 149 38.9
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 8.9e-15 84.7 151 37.1
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 1.5e-14 84.0 151 37.1
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 2.6e-14 83.2 176 33.5
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 7.6e-14 81.6 78 50.0
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 6.4e-13 78.6 127 40.9
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.4e-12 77.4 150 34.7
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.4e-12 76.6 78 50.0
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 4.2e-12 75.9 101 43.6
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 1.3e-10 70.9 153 35.9
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 5.1e-10 68.9 152 32.2
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 6.6e-10 68.6 147 31.3
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 1.1e-09 67.8 148 35.1
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 4.7e-08 62.4 166 28.9
AagrBONN_evm.TU.Sc2ySwM_228.653 Anthoceros agrestis HOM05D002663 ORTHO05D021316 2.0e-06 57.0 88 33.0


User provided reference genes

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