Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 3.1e-125 451.8 230 100.0
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 3.6e-41 172.6 134 68.7
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 8.9e-40 167.9 136 65.4
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 1.5e-39 167.2 131 65.6
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 1.5e-39 167.2 131 65.6
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 2.0e-39 166.8 132 62.9
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 2.2e-38 163.3 131 64.9
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 2.4e-37 159.8 128 62.5
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 3.2e-37 159.5 140 62.1
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 5.4e-37 158.7 132 62.9
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 3.5e-36 156.0 140 60.7
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 4.6e-36 155.6 140 62.1
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 4.6e-36 155.6 128 62.5
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 7.8e-36 154.8 140 60.7
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 2.3e-35 153.3 133 59.4
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 2.3e-35 153.3 128 62.5
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 3.9e-35 152.5 135 63.0
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 3.9e-35 152.5 142 58.5
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 5.1e-35 152.1 121 63.6
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 8.6e-35 151.4 132 61.4
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 1.1e-34 151.0 119 63.9
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 1.5e-34 150.6 140 57.1
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.9e-34 150.2 130 66.2
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 1.9e-34 150.2 133 63.9
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 2.5e-34 149.8 136 62.5
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 4.3e-34 149.1 132 60.6
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 4.3e-34 149.1 132 60.6
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 5.6e-34 148.7 127 62.2
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.2e-33 147.5 133 57.9
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 3.6e-33 146.0 140 57.1
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 4.7e-33 145.6 131 61.8
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 4.7e-33 145.6 128 61.7
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 1.1e-32 144.4 131 61.8
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 1.8e-32 143.7 126 61.1
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 1.8e-32 143.7 130 60.0
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 2.4e-32 143.3 151 57.6
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 3.1e-32 142.9 128 63.3
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 4.0e-32 142.5 125 59.2
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 5.2e-32 142.1 140 59.3
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 5.2e-32 142.1 132 59.1
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 6.8e-32 141.7 114 65.8
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 8.9e-32 141.4 126 61.1
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 1.5e-31 140.6 128 61.7
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 1.5e-31 140.6 128 61.7
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.5e-31 140.6 123 65.9
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 1.5e-31 140.6 126 59.5
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 2.0e-31 140.2 133 60.2
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.0e-31 140.2 139 55.4
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 2.6e-31 139.8 127 58.3
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 2.6e-31 139.8 115 64.3
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 2.6e-31 139.8 114 64.0
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 3.4e-31 139.4 145 57.2
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 3.4e-31 139.4 124 58.9
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 3.4e-31 139.4 139 56.1
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 5.8e-31 138.7 139 54.7
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 5.8e-31 138.7 114 64.0
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 7.6e-31 138.3 131 58.0
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 9.9e-31 137.9 129 62.0
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 9.9e-31 137.9 129 62.0
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 1.3e-30 137.5 139 59.0
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 1.3e-30 137.5 135 58.5
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 1.7e-30 137.1 128 61.7
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 2.2e-30 136.7 114 63.2
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.2e-30 136.7 143 55.2
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 4.9e-30 135.6 131 58.0
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 4.9e-30 135.6 130 56.2
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 4.9e-30 135.6 114 61.4
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 8.4e-30 134.8 119 60.5
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 8.4e-30 134.8 115 63.5
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 1.4e-29 134.0 133 57.9
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 1.9e-29 133.7 117 60.7
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 2.4e-29 133.3 135 54.8
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 5.4e-29 132.1 128 59.4
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 9.2e-29 131.3 122 60.7
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 1.2e-28 131.0 131 58.8
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 1.2e-28 131.0 131 58.8
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 1.6e-28 130.6 118 59.3
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 2.1e-28 130.2 140 56.4
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 2.7e-28 129.8 128 50.8
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 2.7e-28 129.8 128 56.2
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 3.0e-27 126.3 121 58.7
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 5.1e-27 125.6 127 54.3
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 1.5e-26 124.0 104 63.5
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 1.9e-26 123.6 93 64.5
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 3.3e-26 122.9 105 63.8
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 1.6e-25 120.6 108 62.0
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 2.8e-25 119.8 110 58.2
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 4.8e-25 119.0 130 53.8
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 6.2e-25 118.6 121 55.4
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 8.1e-25 118.2 121 55.4
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 1.8e-24 117.1 134 52.2
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 1.8e-24 117.1 126 50.0
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 6.9e-24 115.2 106 59.4
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 2.2e-22 110.2 131 48.1
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 3.0e-19 99.8 98 56.1
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 2.8e-17 93.2 132 40.9
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 1.1e-13 81.3 120 39.2
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.1e-10 71.2 107 42.1
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 1.9e-10 70.5 88 39.8
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 2.0e-07 60.5 109 32.1
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 2.0e-07 60.5 109 32.1
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 4.9e-06 55.8 77 40.3
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 4.9e-06 55.8 87 34.5


User provided reference genes

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