Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 0.0e+00 2312.0 1228 100.0
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.3e-48 198.0 1304 27.3
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 8.4e-36 157.1 1348 25.4
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 7.6e-29 134.0 1398 24.5
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.3e-28 133.3 88 72.7
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 2.2e-28 132.5 880 25.9
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 8.4e-28 130.6 84 75.0
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 2.7e-26 125.6 1314 24.9
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.1e-24 120.2 134 50.0
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.9e-24 119.4 123 54.5
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 7.4e-24 117.5 83 67.5
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 7.4e-24 117.5 94 58.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 9.6e-24 117.1 1267 23.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 9.6e-24 117.1 109 52.3
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.3e-23 116.7 1272 24.3
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.3e-23 116.7 109 52.3
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 6.2e-23 114.4 99 56.6
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.1e-22 113.6 116 53.4
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 2.4e-22 112.5 109 52.3
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 3.1e-22 112.1 86 64.0
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 4.0e-22 111.7 83 62.7
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.0e-21 109.4 82 59.8
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.9e-20 105.5 752 25.5
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 2.9e-20 105.5 82 62.2
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 3.8e-20 105.1 109 55.0
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 3.8e-20 105.1 432 27.8
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.5e-19 102.4 1370 23.6
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.5e-19 102.4 127 48.0
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 4.2e-19 101.7 285 32.3
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 4.6e-18 98.2 109 46.8
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 4.6e-18 98.2 126 48.4
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 6.1e-18 97.8 157 38.9
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 7.9e-18 97.4 82 54.9
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.3e-17 96.7 606 25.6
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 6.7e-17 94.4 191 30.9
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 8.7e-17 94.0 88 52.3
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.5e-16 93.2 108 45.4
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.9e-16 92.8 1242 22.5
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 2.5e-16 92.4 514 26.7
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 5.7e-16 91.3 1232 23.9
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 7.4e-16 90.9 474 24.3
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 9.7e-16 90.5 1344 23.8
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 9.7e-16 90.5 1222 23.5
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.3e-15 90.1 99 45.5
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.8e-15 89.0 80 51.2
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.8e-15 89.0 82 48.8
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.8e-15 88.2 82 48.8
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.3e-15 87.8 162 36.4
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.3e-15 87.8 157 37.6
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 1.8e-14 86.3 94 44.7
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 4.1e-14 85.1 381 27.6
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.3e-14 84.7 401 27.2
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 9.0e-14 84.0 87 49.4
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.5e-13 83.2 91 46.2
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.5e-13 83.2 391 27.4
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.0e-13 82.8 248 27.8
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 2.6e-13 82.4 124 41.1
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 2.6e-13 82.4 968 24.5
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.4e-13 82.0 1296 24.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 3.4e-13 82.0 690 24.6
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.4e-13 82.0 86 46.5
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 4.5e-13 81.6 1087 23.6
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.7e-13 80.9 83 51.8
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.0e-12 80.5 370 28.4
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 2.2e-12 79.3 92 45.7
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 2.2e-12 79.3 92 45.7
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.9e-12 79.0 107 43.9
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.9e-12 79.0 386 26.4
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 2.9e-12 79.0 392 26.3
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 2.9e-12 79.0 1262 23.8
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 3.8e-12 78.6 92 43.5
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 3.8e-12 78.6 92 43.5
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 3.8e-12 78.6 139 33.1
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 3.8e-12 78.6 85 49.4
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 5.0e-12 78.2 1269 23.4
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 6.5e-12 77.8 86 43.0
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 6.5e-12 77.8 89 48.3
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 6.5e-12 77.8 84 48.8
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 8.5e-12 77.4 88 42.0
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.1e-11 77.0 88 42.0
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.1e-11 77.0 85 45.9
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.4e-11 76.6 86 46.5
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.9e-11 76.3 80 47.5
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.9e-11 76.3 278 27.7
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.5e-11 75.9 84 45.2
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.5e-11 75.9 83 45.8
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 2.5e-11 75.9 85 44.7
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 3.2e-11 75.5 84 44.0
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.2e-11 75.5 83 45.8
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 3.2e-11 75.5 83 42.2
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.2e-11 75.5 87 46.0
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.2e-11 75.5 88 40.9
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 7.2e-11 74.3 96 39.6
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 7.2e-11 74.3 89 42.7
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 7.2e-11 74.3 227 27.8
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 7.2e-11 74.3 101 41.6
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.6e-10 73.2 90 41.1
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.1e-10 72.8 86 43.0
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.1e-10 72.8 151 32.5
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 2.1e-10 72.8 232 28.4
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.1e-10 72.8 90 41.1
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.7e-10 72.4 755 24.2
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 2.7e-10 72.4 86 47.7
Eucgr.B03235 Eucalyptus grandis HOM05D005863 ORTHO05D003355 3.6e-10 72.0 132 42.4
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 3.6e-10 72.0 85 43.5
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.6e-10 72.0 113 38.9
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 4.6e-10 71.6 174 30.5
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 4.6e-10 71.6 94 39.4
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.9e-10 70.9 306 25.8
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 1.0e-09 70.5 453 27.8
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.0e-09 70.5 80 42.5
CDE02G3774 Ceratophyllum demersum HOM05D005863 ORTHO05D003355 1.0e-09 70.5 77 45.5
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 1.0e-09 70.5 60 51.7
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.0e-09 70.5 87 36.8
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.4e-09 70.1 76 46.1
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.4e-09 70.1 76 46.1
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.8e-09 69.7 84 42.9
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 1.8e-09 69.7 146 32.9
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.8e-09 69.7 386 26.2
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 2.3e-09 69.3 86 40.7
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 2.3e-09 69.3 86 40.7
PSO478G3985 Papaver somniferum HOM05D040514 ORTHO05D003355 2.3e-09 69.3 403 25.8
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 2.3e-09 69.3 178 29.8
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 3.0e-09 68.9 86 41.9
Cfa009271 Carpinus fangiana HOM05D005863 ORTHO05D003355 3.9e-09 68.6 389 28.3
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 3.9e-09 68.6 81 43.2
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 3.9e-09 68.6 1240 22.7
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 3.9e-09 68.6 83 41.0
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.9e-09 68.6 1253 24.0
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.9e-09 68.6 79 45.6
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.9e-09 68.6 79 45.6
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 5.1e-09 68.2 1239 22.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 8.8e-09 67.4 84 40.5
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 1.1e-08 67.0 89 33.7
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.1e-08 67.0 388 22.9
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 1.1e-08 67.0 226 26.1
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.5e-08 66.6 86 40.7
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.5e-08 66.6 86 40.7
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 2.0e-08 66.2 98 37.8
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.5e-08 65.9 92 35.9
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 3.3e-08 65.5 458 21.8
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 3.3e-08 65.5 84 42.9
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 4.3e-08 65.1 401 23.4
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 4.3e-08 65.1 1225 22.8
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 5.7e-08 64.7 89 39.3
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 5.7e-08 64.7 89 39.3
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.3e-07 63.5 92 37.0
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.3e-07 63.5 94 40.4
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.2e-07 62.8 78 42.3
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 2.8e-07 62.4 83 38.6
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 2.8e-07 62.4 86 39.5
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 2.8e-07 62.4 578 23.5
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.8e-07 62.4 1227 23.5
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 2.8e-07 62.4 83 37.3
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 3.7e-07 62.0 82 41.5
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 6.3e-07 61.2 78 42.3
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 8.2e-07 60.8 85 38.8
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 8.2e-07 60.8 1248 22.8
Aa31sc26G90 Aethionema arabicum HOM05D005863 ORTHO05D003355 1.1e-06 60.5 89 30.3
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 1.4e-06 60.1 1334 23.6
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 2.4e-06 59.3 83 36.1
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 2.4e-06 59.3 299 22.7
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 3.1e-06 58.9 103 33.0
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 4.1e-06 58.5 1299 21.7
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 6.9e-06 57.8 201 26.4
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 6.9e-06 57.8 66 42.4
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 9.1e-06 57.4 49 46.9
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 9.1e-06 57.4 71 39.4


User provided reference genes

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