Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 6.1e-157 557.8 350 100.0
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.2e-93 347.4 350 71.1
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.8e-92 343.6 353 70.5
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 4.2e-89 332.4 352 68.5
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.2e-88 330.9 359 66.9
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.7e-87 327.0 350 67.4
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.7e-87 327.0 350 67.1
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.7e-87 327.0 350 67.4
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 5.1e-87 325.5 354 67.2
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 5.1e-87 325.5 350 67.1
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 5.1e-87 325.5 347 67.4
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 6.6e-87 325.1 352 67.6
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 6.6e-87 325.1 352 67.6
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.1e-86 324.3 350 68.3
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.9e-86 323.6 351 66.7
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.5e-86 323.2 352 67.6
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 3.3e-86 322.8 356 66.3
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 7.3e-86 321.6 376 62.8
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-85 320.5 355 66.2
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 6.2e-85 318.5 354 65.5
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.1e-84 317.8 350 67.1
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.8e-84 317.0 352 66.5
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.3e-84 315.5 359 64.9
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.5e-83 313.9 352 65.9
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 4.5e-83 312.4 350 66.0
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 7.6e-83 311.6 353 64.9
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.3e-82 310.8 350 66.0
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.3e-82 310.8 350 66.0
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.9e-82 309.7 350 66.3
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.8e-82 309.3 350 65.7
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 6.4e-82 308.5 349 65.0
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.4e-81 307.4 354 65.8
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.4e-81 306.6 346 65.0
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.2e-81 306.2 379 60.9
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 5.4e-81 305.4 369 62.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 7.1e-81 305.1 350 63.7
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 7.1e-81 305.1 354 64.4
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.6e-80 303.9 349 64.5
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.7e-80 303.1 352 64.2
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 4.6e-80 302.4 352 58.2
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 4.6e-80 302.4 349 65.0
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.0e-79 301.2 349 63.9
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.5e-78 296.6 322 69.6
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 2.5e-78 296.6 353 63.5
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 4.3e-78 295.8 352 62.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 9.6e-78 294.7 349 61.9
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.6e-77 293.9 350 63.7
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.8e-77 293.1 341 64.5
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 3.7e-77 292.7 348 64.7
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 6.2e-77 292.0 290 72.1
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.1e-76 291.2 351 63.2
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.1e-76 291.2 343 61.5
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.4e-76 290.8 336 65.2
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.4e-76 290.0 349 62.8
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 3.1e-76 289.7 372 60.2
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 4.0e-76 289.3 350 63.1
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 6.9e-76 288.5 350 62.6
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 9.0e-76 288.1 351 62.1
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.2e-75 287.7 353 61.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.5e-75 287.3 360 61.7
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.4e-75 286.2 396 43.9
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.3e-74 284.3 358 62.0
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.2e-74 283.5 348 62.6
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 2.9e-74 283.1 355 61.1
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 8.4e-74 281.6 350 62.6
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.4e-73 280.8 351 61.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.4e-73 280.8 360 61.1
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 9.3e-73 278.1 283 70.0
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 9.3e-73 278.1 361 60.9
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.6e-72 277.3 349 60.7
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 2.1e-72 276.9 351 61.0
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 2.1e-72 276.9 349 58.5
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 6.0e-72 275.4 351 59.8
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.8e-71 273.9 297 68.7
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.1e-70 271.2 353 58.1
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.9e-70 270.4 352 56.8
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 2.5e-70 270.0 350 59.4
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.5e-70 270.0 347 59.7
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.6e-69 267.3 332 62.3
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.8e-69 265.8 350 57.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.1e-68 264.6 345 58.6
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.4e-68 263.5 351 51.9
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 1.2e-67 261.2 234 59.0
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.2e-67 261.2 229 59.4
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.6e-67 260.0 359 58.8
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 7.6e-67 258.5 352 58.0
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.2e-66 256.9 306 65.7
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 8.4e-66 255.0 349 57.9
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 6.0e-64 248.8 347 57.3
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.0e-63 248.1 350 57.7
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.7e-63 245.4 347 56.5
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.3e-62 242.7 244 53.7
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 9.7e-62 241.5 287 63.4
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.3e-61 241.1 313 62.6
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.6e-61 240.7 347 56.2
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.2e-61 240.4 229 56.3
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.2e-61 240.4 348 52.6
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.1e-60 238.0 241 75.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.1e-60 238.0 347 57.9
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.8e-60 237.3 291 54.6
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 2.4e-60 236.9 248 52.4
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.9e-60 235.3 374 38.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-58 230.3 347 55.3
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.1e-57 228.0 428 47.9
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.1e-57 228.0 353 55.5
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 4.2e-57 226.1 228 53.5
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 7.2e-57 225.3 356 53.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 5.1e-55 219.2 343 56.6
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 4.8e-53 212.6 185 56.8
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.2e-53 211.8 347 54.2
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 8.2e-53 211.8 319 41.7
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 5.9e-51 205.7 312 57.1
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 4.5e-43 179.5 189 51.9
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 6.5e-42 175.6 264 58.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 4.2e-41 172.9 189 50.3
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 4.7e-40 169.5 193 75.6
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.4e-39 167.9 193 74.6
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 7.0e-36 155.6 176 48.9
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.0e-35 154.1 241 61.0
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 5.9e-35 152.5 278 51.8
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 8.5e-34 148.7 288 49.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 5.5e-33 146.0 214 37.9
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 3.4e-30 136.7 126 52.4
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.5e-27 126.7 185 39.5
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-25 120.9 182 39.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-24 118.2 171 39.8
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 2.1e-24 117.5 165 73.9
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.4e-22 109.8 145 82.1
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.2e-19 101.7 79 57.0
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.3e-18 98.2 107 43.9
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.3e-17 93.6 127 82.7
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 6.1e-16 89.4 64 67.2
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.1e-16 89.4 81 54.3
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 8.9e-15 85.5 133 61.7
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.4e-14 83.2 122 85.2
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 5.4e-12 76.3 85 45.9
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.3e-09 65.9 38 76.3
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.3e-07 60.8 57 50.9
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.5e-06 58.2 40 62.5
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 2.0e-06 57.8 39 69.2
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 2.0e-06 57.8 39 69.2
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 2.6e-06 57.4 57 50.9


User provided reference genes

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