Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.2e-82 308.9 159 100.0
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 4.3e-41 171.8 106 85.8
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 4.3e-25 118.6 109 59.6
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.2e-24 117.1 109 57.8
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 6.2e-24 114.8 110 57.3
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.4e-23 112.8 111 57.7
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 2.6e-22 109.4 113 55.8
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 3.4e-22 109.0 142 50.7
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 7.6e-22 107.8 139 50.4
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-19 100.5 106 50.9
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 4.6e-19 98.6 135 47.4
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 6.0e-19 98.2 105 53.3
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.0e-18 97.4 134 48.5
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 1.0e-18 97.4 109 53.2
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.7e-18 96.7 110 51.8
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.7e-18 96.7 110 51.8
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.3e-18 96.3 135 48.1
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 6.6e-18 94.7 135 46.7
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.1e-17 94.0 107 54.2
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-17 94.0 131 47.3
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.5e-17 93.6 135 45.9
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.5e-17 93.6 131 47.3
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.5e-17 93.6 137 48.9
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.9e-17 93.2 138 49.3
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.9e-17 93.2 105 53.3
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.9e-17 93.2 111 51.4
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 3.3e-17 92.4 131 47.3
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.3e-17 92.4 113 54.9
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 3.3e-17 92.4 136 46.3
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 4.3e-17 92.0 105 52.4
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 5.6e-17 91.7 141 43.3
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 5.6e-17 91.7 135 46.7
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 5.6e-17 91.7 107 51.4
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 5.6e-17 91.7 133 49.6
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 7.3e-17 91.3 133 44.4
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 9.6e-17 90.9 116 52.6
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.3e-16 90.5 146 43.2
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.3e-16 90.5 110 51.8
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.6e-16 90.1 113 51.3
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.6e-16 90.1 110 50.0
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.6e-16 90.1 105 52.4
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.6e-16 90.1 110 51.8
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.6e-16 90.1 143 50.3
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.1e-16 89.7 140 45.7
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 2.1e-16 89.7 135 45.2
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 2.8e-16 89.4 138 47.8
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.8e-16 89.4 113 49.6
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.8e-16 89.4 131 46.6
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 3.6e-16 89.0 142 45.8
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 3.6e-16 89.0 115 53.9
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 4.8e-16 88.6 137 45.3
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 6.2e-16 88.2 130 44.6
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 6.2e-16 88.2 113 51.3
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 6.2e-16 88.2 132 43.9
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 6.2e-16 88.2 111 50.5
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 6.2e-16 88.2 114 49.1
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 8.1e-16 87.8 111 49.5
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 8.1e-16 87.8 132 47.0
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.1e-15 87.4 134 44.0
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.4e-15 87.0 113 51.3
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 1.4e-15 87.0 131 42.7
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.8e-15 86.7 148 42.6
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.8e-15 86.7 132 47.7
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 2.4e-15 86.3 132 42.4
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-15 86.3 106 48.1
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.4e-15 86.3 106 50.9
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 4.0e-15 85.5 112 50.0
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 4.0e-15 85.5 112 50.0
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 4.0e-15 85.5 112 50.0
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 5.3e-15 85.1 110 50.9
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 5.3e-15 85.1 113 49.6
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 5.3e-15 85.1 109 50.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 5.3e-15 85.1 112 50.0
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 5.3e-15 85.1 109 50.5
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 5.3e-15 85.1 109 50.5
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 5.3e-15 85.1 105 50.5
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 5.3e-15 85.1 111 48.6
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 6.9e-15 84.7 135 41.5
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 6.9e-15 84.7 107 45.8
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 9.0e-15 84.3 107 48.6
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 9.0e-15 84.3 139 44.6
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.2e-14 84.0 138 46.4
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 2.0e-14 83.2 113 48.7
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 3.4e-14 82.4 139 46.8
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 5.8e-14 81.6 110 51.8
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 7.6e-14 81.3 84 56.0
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 7.6e-14 81.3 69 60.9
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 9.9e-14 80.9 109 48.6
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 9.9e-14 80.9 109 48.6
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 9.9e-14 80.9 120 45.0
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 1.3e-13 80.5 109 46.8
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 3.8e-13 79.0 123 43.1
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 4.9e-13 78.6 111 46.8
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 6.4e-13 78.2 106 43.4
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 8.4e-13 77.8 129 43.4
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-12 77.4 106 45.3
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.1e-12 77.4 135 46.7
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.4e-12 77.0 144 38.2
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 3.2e-12 75.9 115 48.7
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.6e-11 73.6 138 42.8
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.1e-11 73.2 109 45.0
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.7e-11 72.8 112 43.8
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.5e-11 72.4 109 45.0
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 3.5e-11 72.4 91 45.1
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 1.0e-10 70.9 101 46.5
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.0e-10 70.9 71 57.7
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.3e-10 70.5 109 45.0
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 1.7e-10 70.1 139 40.3
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 2.3e-10 69.7 59 66.1
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 5.1e-10 68.6 85 50.6
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 6.6e-10 68.2 62 61.3
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 6.6e-10 68.2 106 42.5
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 8.7e-10 67.8 76 55.3
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 8.7e-10 67.8 106 41.5
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-09 67.4 129 39.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 1.9e-09 66.6 109 43.1
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 2.5e-09 66.2 94 45.7
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 4.3e-09 65.5 132 34.8
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 4.3e-09 65.5 105 41.0
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.6e-08 63.5 86 50.0
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.6e-08 63.5 134 39.6
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.1e-08 63.2 139 34.5
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 4.8e-08 62.0 74 50.0
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 4.8e-08 62.0 106 40.6
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 8.1e-08 61.2 76 55.3
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.4e-07 59.7 86 48.8
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 5.3e-07 58.5 84 40.5
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 5.8e-06 55.1 65 46.2


User provided reference genes

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