Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.2e-188 662.9 318 100.0
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 4.0e-147 525.0 317 78.9
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 6.8e-147 524.2 316 77.8
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.2e-146 523.5 316 79.4
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 7.5e-146 520.8 317 77.0
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.9e-145 518.1 320 76.2
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.1e-144 516.9 317 77.0
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.1e-144 516.9 316 75.6
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 3.1e-144 515.4 316 75.9
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.4e-144 514.6 320 75.9
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 7.0e-144 514.2 316 76.6
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 3.5e-143 511.9 392 65.8
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 5.9e-143 511.1 317 76.3
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 7.8e-143 510.8 320 75.6
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.7e-142 509.6 317 74.4
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.3e-142 509.2 319 75.9
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.5e-141 506.5 321 74.8
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 1.5e-141 506.5 317 74.8
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 5.6e-141 504.6 317 75.1
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.2e-140 503.4 316 74.7
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 6.1e-140 501.1 316 72.2
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 8.0e-140 500.7 316 73.4
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.8e-139 499.6 316 74.4
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 8.9e-139 497.3 317 73.2
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 8.9e-139 497.3 316 73.7
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.2e-138 496.9 316 72.2
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 2.0e-138 496.1 317 73.8
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 2.6e-138 495.7 320 74.1
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 5.8e-138 494.6 319 73.4
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 5.8e-138 494.6 318 73.6
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 7.5e-138 494.2 317 72.6
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 9.8e-138 493.8 317 72.9
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 9.8e-138 493.8 314 73.9
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 2.2e-137 492.7 318 73.3
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 2.2e-137 492.7 319 73.0
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.7e-137 491.9 318 73.9
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.9e-137 491.5 319 73.4
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.4e-137 491.1 316 72.8
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 6.4e-137 491.1 320 73.8
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.4e-136 490.0 318 73.6
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.4e-136 490.0 316 71.8
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.4e-136 489.2 321 72.3
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.2e-136 488.8 316 71.5
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.4e-136 488.0 321 72.0
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.0e-135 486.1 319 72.4
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.7e-135 485.7 339 69.3
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 3.5e-135 485.3 319 72.4
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 3.5e-135 485.3 320 72.5
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.6e-135 485.0 316 70.9
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 6.0e-135 484.6 317 72.6
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 7.8e-135 484.2 304 75.3
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.0e-134 483.8 368 64.7
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.3e-134 483.4 316 72.2
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.3e-134 483.4 314 72.0
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.7e-134 483.0 316 71.8
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.3e-134 482.6 316 69.3
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.0e-134 482.3 316 73.7
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 3.0e-134 482.3 370 64.3
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 3.0e-134 482.3 321 72.0
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 3.0e-134 482.3 317 72.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 5.0e-134 481.5 339 70.2
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.0e-134 481.5 314 72.3
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 8.6e-134 480.7 316 69.6
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.9e-133 479.6 318 69.8
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 4.3e-133 478.4 316 71.2
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 7.3e-133 477.6 320 71.9
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 7.3e-133 477.6 319 71.8
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 9.5e-133 477.2 316 70.9
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.2e-132 476.9 316 73.1
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.6e-132 476.5 317 70.3
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.1e-132 476.1 316 70.6
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.8e-132 475.7 316 70.9
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 3.6e-132 475.3 334 66.5
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.6e-132 475.3 319 69.3
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.1e-131 473.8 316 72.2
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-131 473.8 316 69.3
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.4e-131 473.4 316 69.9
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.8e-131 473.0 318 69.8
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.1e-131 472.2 316 69.6
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.0e-131 471.9 318 69.2
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 3.4e-130 468.8 319 69.0
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 3.4e-130 468.8 316 69.0
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 4.4e-130 468.4 317 70.0
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 4.4e-130 468.4 317 70.0
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 9.8e-130 467.2 317 70.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 2.2e-129 466.1 319 68.0
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-129 466.1 316 69.3
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.7e-129 465.3 316 69.0
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.1e-128 463.8 319 68.3
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.4e-128 463.4 319 67.7
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.4e-128 463.4 318 67.6
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 2.4e-128 462.6 316 68.4
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 2.4e-128 462.6 319 68.3
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 3.2e-128 462.2 321 67.3
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 4.1e-128 461.8 316 67.7
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 7.0e-128 461.1 321 68.2
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 7.0e-128 461.1 319 68.0
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 7.0e-128 461.1 319 68.0
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 7.0e-128 461.1 323 66.9
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.6e-127 459.9 319 68.0
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.0e-127 459.5 321 67.9
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.5e-127 458.8 316 69.0
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.6e-127 458.4 316 66.8
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.6e-127 458.4 316 66.8
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.0e-126 457.2 321 67.3
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.0e-126 457.2 318 67.9
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.3e-126 456.8 321 67.3
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 2.3e-126 456.1 319 67.4
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 5.0e-126 454.9 319 67.4
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.9e-125 453.0 316 69.3
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 9.5e-125 450.7 321 67.3
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 8.1e-124 447.6 318 66.7
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.8e-123 446.4 308 67.9
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 6.8e-123 444.5 321 66.7
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 7.5e-122 441.0 317 67.5
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.7e-121 439.9 320 68.1
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.7e-121 438.7 293 67.2
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.4e-120 436.8 319 65.5
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.0e-118 430.6 404 55.7
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.7e-118 429.9 316 65.2
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.4e-115 420.2 290 70.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 6.8e-115 417.9 325 61.8
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.8e-113 412.1 284 68.3
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 7.1e-112 407.9 267 71.2
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 5.6e-109 398.3 290 66.9
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.6e-109 397.5 316 61.1
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.6e-108 395.6 322 62.7
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 3.8e-105 385.6 333 57.4
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 5.1e-102 375.2 338 55.3
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.6e-100 370.2 318 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.2e-98 364.0 318 55.3
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.5e-98 363.6 318 57.9
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 3.4e-98 362.5 305 60.7
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 2.9e-97 359.4 322 54.7
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 9.6e-93 344.4 293 57.7
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.8e-91 340.1 316 51.9
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 5.8e-90 335.1 244 66.0
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 3.2e-88 329.3 226 68.6
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 4.0e-83 312.4 354 45.8
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 5.1e-78 295.4 199 68.8
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 8.2e-76 288.1 220 62.7
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 4.5e-74 282.3 186 72.6
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 9.4e-72 274.6 183 72.1
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.1e-63 245.4 169 69.2
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.1e-62 242.3 306 47.1
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 4.4e-61 239.2 188 63.3
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.4e-59 234.2 152 74.3
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.8e-54 217.2 145 70.3
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 3.7e-52 209.5 140 68.6
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.3e-43 179.1 147 56.5
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 6.3e-36 155.6 100 68.0
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.3e-36 155.2 124 61.3
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.8e-35 154.1 116 62.9
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 3.3e-32 143.3 111 61.3
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 8.9e-30 135.2 93 68.8
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.5e-29 134.4 92 67.4
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 2.6e-29 133.7 75 78.7
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 2.4e-27 127.1 79 68.4
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 4.5e-26 122.9 106 61.3
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.5e-24 117.9 86 61.6
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 8.0e-23 112.1 165 41.2
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 1.4e-22 111.3 74 67.6
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 5.2e-22 109.4 67 67.2
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 6.0e-18 95.9 57 71.9
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 6.2e-15 85.9 73 60.3
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.1e-11 75.1 42 83.3
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 1.2e-07 61.6 51 58.8
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.8e-06 57.8 56 51.8
PGR102G2199 Punica granatum HOM05D004085 ORTHO05D000487 5.2e-06 56.2 54 48.1
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.2e-06 56.2 81 48.1


User provided reference genes

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