Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0007610 Simmondsia chinensis HOM05D000171 ORTHO05D051015 5.2e-259 897.1 426 100.0
Sc14g0007620 Simmondsia chinensis HOM05D000171 ORTHO05D051015 6.6e-89 332.0 266 59.8
Carub.0001s4019 Capsella rubella HOM05D000171 ORTHO05D000101 5.7e-16 89.7 238 26.1
AT3G10240 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.4e-14 84.3 196 29.6
AL1G45480 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-13 82.0 191 25.7
Thhalv10015870m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.7e-12 78.2 238 24.4
Potri.001G458400 Populus trichocarpa HOM05D000007 ORTHO05D000101 2.9e-12 77.4 193 31.1
CARHR186290 Cardamine hirsuta HOM05D000171 ORTHO05D000101 6.5e-12 76.3 241 26.6
Dinv16551 Davidia involucrata HOM05D000171 ORTHO05D000101 6.5e-12 76.3 213 31.0
A06p17520 Brassica napus HOM05D000987 ORTHO05D000831 8.5e-12 75.9 246 27.6
BraA06t24848Z Brassica rapa HOM05D000987 ORTHO05D000831 8.5e-12 75.9 246 27.6
HanXRQChr02g0049281 Helianthus annuus HOM05D000171 ORTHO05D000101 1.1e-11 75.5 212 27.4
AL1G45610 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.9e-11 74.7 243 28.8
Lsat_1_v5_gn_9_65340 Lactuca sativa HOM05D000171 ORTHO05D000101 1.9e-11 74.7 211 27.5
PGR119G0108 Punica granatum HOM05D000171 ORTHO05D000101 2.5e-11 74.3 210 27.6
Sp1g34800 Schrenkiella parvula HOM05D000171 ORTHO05D000101 2.5e-11 74.3 196 25.5
BcaB07g33525 Brassica carinata HOM05D000171 ORTHO05D000101 3.2e-11 73.9 209 29.7
A09p16070 Brassica napus HOM05D000171 ORTHO05D000101 7.2e-11 72.8 199 28.6
BraA09t37243Z Brassica rapa HOM05D000171 ORTHO05D000101 7.2e-11 72.8 199 28.6
A06p02840 Brassica napus HOM05D000171 ORTHO05D000101 1.2e-10 72.0 221 24.4
C06p06060 Brassica napus HOM05D000171 ORTHO05D000101 1.2e-10 72.0 205 25.4
RcHm_v2.0_Chr2g0138411 Rosa chinensis HOM05D000007 ORTHO05D022672 1.6e-10 71.6 246 25.6
Thhalv10015829m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.1e-10 71.2 202 25.7
AT1G47790 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.7e-10 70.9 192 27.1
AT1G50870 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.7e-10 70.9 205 28.3
BolC6t35719H Brassica oleracea HOM05D000171 ORTHO05D000101 2.7e-10 70.9 205 24.9
Aqoxy3G01081 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 3.6e-10 70.5 200 27.5
Aa31LG6G12110 Aethionema arabicum HOM05D000171 ORTHO05D000101 4.7e-10 70.1 253 21.3
BraA05t19704Z Brassica rapa HOM05D000171 ORTHO05D000101 4.7e-10 70.1 204 27.0
THA.LOC104801504 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 6.1e-10 69.7 211 27.5
Carub.0003s0941 Capsella rubella HOM05D000171 ORTHO05D000101 1.4e-09 68.6 198 25.3
CARHR265180 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.4e-09 68.6 158 31.6
CARHR040900 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.3e-09 67.8 205 29.3
BcaB07g33529 Brassica carinata HOM05D000171 ORTHO05D000101 4.0e-09 67.0 193 27.5
A08p02150 Brassica napus HOM05D000171 ORTHO05D000101 4.0e-09 67.0 211 26.1
BraA04t17945Z Brassica rapa HOM05D000171 ORTHO05D000101 4.0e-09 67.0 263 24.0
A08p16640 Brassica napus HOM05D000171 ORTHO05D000101 5.2e-09 66.6 184 26.6
BraA08t33629Z Brassica rapa HOM05D000171 ORTHO05D000101 5.2e-09 66.6 184 26.6
AL1G45580 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.8e-09 66.2 224 26.3
C03p85560 Brassica napus HOM05D000171 ORTHO05D000101 6.8e-09 66.2 184 27.2
C03p90650 Brassica napus HOM05D000171 ORTHO05D000101 6.8e-09 66.2 211 27.0
BolC3t20844H Brassica oleracea HOM05D000171 ORTHO05D000101 6.8e-09 66.2 184 27.2
BraA08t32262Z Brassica rapa HOM05D000171 ORTHO05D000101 6.8e-09 66.2 207 27.1
CARHR167830 Cardamine hirsuta HOM05D000171 ORTHO05D000101 6.8e-09 66.2 186 24.7
Sp1g37610 Schrenkiella parvula HOM05D000171 ORTHO05D000101 6.8e-09 66.2 201 26.4
PGSC0003DMG400045879 Solanum tuberosum HOM05D013992 ORTHO05D011565 6.8e-09 66.2 248 27.4
C07p52590 Brassica napus HOM05D002608 ORTHO05D000101 8.8e-09 65.9 103 35.0
BolC3t21387H Brassica oleracea HOM05D000171 ORTHO05D000101 8.8e-09 65.9 215 26.5
BolC7t45757H Brassica oleracea HOM05D000171 ORTHO05D000101 8.8e-09 65.9 103 35.0
Thhalv10012345m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.8e-09 65.9 199 25.6
Carub.0001s2948 Capsella rubella HOM05D000171 ORTHO05D000101 1.2e-08 65.5 194 23.2
Thhalv10009934m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.5e-08 65.1 239 24.3
FvH4_4g07100 Fragaria vesca HOM05D000007 ORTHO05D009073 1.5e-08 65.1 231 26.4
Prupe.1G283900 Prunus persica HOM05D003015 ORTHO05D009073 1.5e-08 65.1 226 25.2
Carub.0008s0812 Capsella rubella HOM05D000171 ORTHO05D000101 2.0e-08 64.7 159 27.7
Thhalv10009588m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.0e-08 64.7 178 27.5
A05p07390 Brassica napus HOM05D000171 ORTHO05D000101 2.6e-08 64.3 158 27.2
C04p61010 Brassica napus HOM05D000171 ORTHO05D000101 2.6e-08 64.3 219 22.8
C04p61040 Brassica napus HOM05D000171 ORTHO05D000101 2.6e-08 64.3 219 22.8
BolC4t27589H Brassica oleracea HOM05D000171 ORTHO05D000101 2.6e-08 64.3 219 22.8
BraA05t19705Z Brassica rapa HOM05D000171 ORTHO05D000101 2.6e-08 64.3 158 27.2
Thhalv10003347m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.6e-08 64.3 159 29.6
Peaxi162Scf00205g00134 Petunia axillaris HOM05D012079 ORTHO05D011565 2.6e-08 64.3 150 30.7
Thhalv10027600m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.4e-08 63.5 207 29.5
Prupe.1G285300 Prunus persica HOM05D000007 ORTHO05D009073 4.4e-08 63.5 305 24.3
BcaB08g34490 Brassica carinata HOM05D000171 ORTHO05D000101 5.7e-08 63.2 192 27.1
CARHR043780 Cardamine hirsuta HOM05D000171 ORTHO05D000101 5.7e-08 63.2 199 26.1
BcaC01g01171 Brassica carinata HOM05D000171 ORTHO05D000101 7.5e-08 62.8 163 27.6
AT1G47800 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 9.8e-08 62.4 214 25.2
BcaC02g07940 Brassica carinata HOM05D000171 ORTHO05D000101 9.8e-08 62.4 152 28.3
BcaC02g07989 Brassica carinata HOM05D000171 ORTHO05D000101 9.8e-08 62.4 187 24.6
A04p24260 Brassica napus HOM05D000171 ORTHO05D000101 9.8e-08 62.4 263 23.6
C03p55070 Brassica napus HOM05D000171 ORTHO05D000101 9.8e-08 62.4 183 25.1
BraA06t23491Z Brassica rapa HOM05D000171 ORTHO05D000101 1.3e-07 62.0 206 27.2
Duzib128G1891 Durio zibethinus HOM05D000007 ORTHO05D001644 1.3e-07 62.0 265 23.0
Aa31LG6G10800 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.7e-07 61.6 215 23.7
AT4G21240 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.7e-07 61.6 228 25.4
A08p19670 Brassica napus HOM05D000171 ORTHO05D000101 1.7e-07 61.6 212 25.9
C03p84110 Brassica napus HOM05D000171 ORTHO05D000101 1.7e-07 61.6 229 26.2
BolC3t17782H Brassica oleracea HOM05D000171 ORTHO05D000101 1.7e-07 61.6 182 24.7
BcaB07g33521 Brassica carinata HOM05D000171 ORTHO05D000101 2.8e-07 60.8 198 24.2
Carub.0004s0538 Capsella rubella HOM05D000171 ORTHO05D000101 2.8e-07 60.8 211 27.0
Haze_25722 Corylus avellana HOM05D000007 ORTHO05D000017 2.8e-07 60.8 211 26.1
Thhalv10000468m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.8e-07 60.8 201 23.9
Thhalv10026790m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.8e-07 60.8 230 25.7
BcaB02g09678 Brassica carinata HOM05D000171 ORTHO05D000101 3.7e-07 60.5 199 28.1
A03p54230 Brassica napus HOM05D000171 ORTHO05D000101 3.7e-07 60.5 130 29.2
C03p89290 Brassica napus HOM05D000171 ORTHO05D000101 3.7e-07 60.5 161 27.3
BolC3t21239H Brassica oleracea HOM05D000171 ORTHO05D000101 3.7e-07 60.5 161 27.3
BraA03t14484Z Brassica rapa HOM05D000171 ORTHO05D000101 3.7e-07 60.5 130 29.2
BraA08t33924Z Brassica rapa HOM05D000171 ORTHO05D000101 3.7e-07 60.5 168 26.8
Carub.0006s1624 Capsella rubella HOM05D000171 ORTHO05D000101 3.7e-07 60.5 153 29.4
Haze_25729 Corylus avellana HOM05D000007 ORTHO05D000017 3.7e-07 60.5 211 26.1
CARHR112760 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.9e-07 60.1 165 28.5
Medtr5g057710 Medicago truncatula HOM05D000007 ORTHO05D000017 4.9e-07 60.1 220 26.4
AL1G53520 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.3e-07 59.7 141 28.4
AL8G43560 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.3e-07 59.7 207 26.1
BcaB02g09798 Brassica carinata HOM05D000171 ORTHO05D000101 6.3e-07 59.7 264 24.2
BolC4t22474H Brassica oleracea HOM05D000171 ORTHO05D000101 6.3e-07 59.7 158 26.6
Thhalv10002973m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.3e-07 59.7 177 26.0
Aa31LG11G10090 Aethionema arabicum HOM05D000171 ORTHO05D000101 8.3e-07 59.3 193 24.4
Thhalv10009740m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.3e-07 59.3 192 24.5
Thecc.03G007700 Theobroma cacao HOM05D000171 ORTHO05D000101 8.3e-07 59.3 153 30.7
AL2G14000 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.1e-06 58.9 171 26.9
BraA01t01322Z Brassica rapa HOM05D000171 ORTHO05D000101 1.1e-06 58.9 187 25.1
AL5G12460 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.4e-06 58.5 192 27.6
BcaC02g07990 Brassica carinata HOM05D000171 ORTHO05D000101 1.4e-06 58.5 184 22.8
A09p35110 Brassica napus HOM05D000171 ORTHO05D000101 1.4e-06 58.5 181 26.5
Nitab4.5_0000259g0150 Nicotiana tabacum HOM05D012079 ORTHO05D011565 1.4e-06 58.5 142 32.4
AL1G62530 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.8e-06 58.2 158 26.6
Thhalv10009377m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.4e-06 57.8 201 24.9
Lsat_1_v5_gn_4_176960 Lactuca sativa HOM05D000007 ORTHO05D000039 2.4e-06 57.8 198 23.2
Prupe.1G169800 Prunus persica HOM05D000007 ORTHO05D000521 2.4e-06 57.8 128 30.5
AL1G45510 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.1e-06 57.4 151 25.2
Carub.0001s3681 Capsella rubella HOM05D000171 ORTHO05D000101 3.1e-06 57.4 144 27.8
Aqoxy7G03198 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 4.1e-06 57.0 199 25.6
Dinv31069 Davidia involucrata HOM05D000007 ORTHO05D000676 4.1e-06 57.0 223 24.2
Lju225C0T9 Lonicera japonica HOM05D000007 ORTHO05D000039 5.4e-06 56.6 209 26.3
AL1G54130 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.0e-06 56.2 189 25.9


User provided reference genes

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