Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 5.3e-53 210.7 102 100.0
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 7.2e-26 120.6 85 69.4
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.8e-25 118.6 88 64.8
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 1.0e-24 116.7 84 65.5
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 8.9e-24 113.6 81 71.6
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.2e-23 113.2 80 61.2
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.2e-23 113.2 90 62.2
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.6e-23 112.1 84 66.7
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.4e-23 111.7 82 65.9
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.4e-23 111.7 79 67.1
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 4.4e-23 111.3 73 72.6
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 4.4e-23 111.3 89 64.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 2.2e-22 109.0 82 65.9
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.2e-22 109.0 80 68.8
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.2e-22 109.0 80 68.8
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.2e-22 109.0 80 68.8
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.2e-22 109.0 77 68.8
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.8e-22 108.6 86 61.6
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 3.7e-22 108.2 80 68.8
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.7e-22 108.2 88 60.2
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.9e-22 107.8 81 67.9
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 4.9e-22 107.8 81 63.0
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 8.3e-22 107.1 83 65.1
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.1e-21 106.7 82 64.6
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.1e-21 106.7 81 61.7
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.1e-21 106.7 85 56.5
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.4e-21 106.3 74 67.6
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.4e-21 105.5 76 68.4
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 2.4e-21 105.5 69 69.6
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 3.1e-21 105.1 88 56.8
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 3.1e-21 105.1 85 63.5
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 4.1e-21 104.8 73 67.1
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 5.4e-21 104.4 78 60.3
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-20 103.2 76 67.1
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.6e-20 102.8 79 63.3
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.6e-20 102.8 86 54.7
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.6e-20 102.8 86 57.0
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.6e-20 102.8 82 59.8
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 2.0e-20 102.4 86 55.8
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 2.0e-20 102.4 69 71.0
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.7e-20 102.1 80 58.8
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.7e-20 102.1 80 58.8
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.7e-20 102.1 80 58.8
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 3.5e-20 101.7 82 62.2
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.5e-20 101.7 86 57.0
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 3.5e-20 101.7 75 60.0
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 4.5e-20 101.3 86 61.6
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 4.5e-20 101.3 76 61.8
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 5.9e-20 100.9 74 60.8
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 5.9e-20 100.9 84 61.9
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.9e-20 100.9 89 59.6
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 7.8e-20 100.5 71 64.8
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-19 100.1 81 63.0
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-19 100.1 81 63.0
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.3e-19 99.8 83 59.0
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.3e-19 99.8 85 54.1
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.7e-19 99.4 71 66.2
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.7e-19 99.4 69 71.0
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.7e-19 99.4 80 61.2
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 1.7e-19 99.4 69 71.0
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 1.7e-19 99.4 93 51.6
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 2.3e-19 99.0 82 59.8
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 2.3e-19 99.0 85 50.6
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 2.3e-19 99.0 102 52.9
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.3e-19 99.0 88 59.1
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 2.3e-19 99.0 86 53.5
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 2.9e-19 98.6 109 45.0
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 2.9e-19 98.6 81 54.3
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 3.8e-19 98.2 86 55.8
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 5.0e-19 97.8 81 61.7
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 5.0e-19 97.8 82 56.1
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 6.6e-19 97.4 109 45.0
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 6.6e-19 97.4 109 45.0
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 6.6e-19 97.4 109 45.0
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 6.6e-19 97.4 75 61.3
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.6e-19 97.4 68 72.1
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 8.6e-19 97.1 100 50.0
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 8.6e-19 97.1 70 62.9
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 8.6e-19 97.1 69 68.1
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 8.6e-19 97.1 92 53.3
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.5e-18 96.3 72 61.1
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 1.5e-18 96.3 93 50.5
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 1.5e-18 96.3 70 67.1
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.9e-18 95.9 72 59.7
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 1.9e-18 95.9 112 44.6
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.9e-18 95.9 109 45.0
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.9e-18 95.9 80 55.0
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 1.9e-18 95.9 69 66.7
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.5e-18 95.5 76 56.6
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 2.5e-18 95.5 82 56.1
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.5e-18 95.5 69 68.1
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 4.3e-18 94.7 72 58.3
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 4.3e-18 94.7 72 58.3
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 4.3e-18 94.7 72 58.3
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 4.3e-18 94.7 72 69.4
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 5.6e-18 94.4 80 53.8
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 5.6e-18 94.4 84 53.6
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.6e-17 92.8 90 48.9
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.6e-17 92.8 87 54.0
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.1e-17 92.4 72 55.6
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.1e-17 92.4 81 54.3
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 2.8e-17 92.0 69 59.4
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 2.8e-17 92.0 69 59.4
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.8e-17 92.0 70 61.4
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 2.8e-17 92.0 70 61.4
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 3.6e-17 91.7 69 59.4
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 4.7e-17 91.3 70 62.9
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 6.1e-17 90.9 92 50.0
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 8.0e-17 90.5 90 47.8
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 8.0e-17 90.5 68 58.8
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.3e-16 89.0 68 60.3
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 3.0e-16 88.6 83 49.4
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 3.0e-16 88.6 67 68.7
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 4.0e-16 88.2 69 62.3
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 4.0e-16 88.2 69 62.3
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 4.0e-16 88.2 87 51.7
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 5.2e-16 87.8 72 58.3
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.5e-15 86.3 74 56.8
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 9.8e-15 83.6 71 57.7
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.8e-13 79.3 63 61.9
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 2.0e-12 75.9 68 57.4
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 4.6e-12 74.7 60 56.7
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 1.1e-10 70.1 48 66.7
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 7.3e-10 67.4 74 50.0
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 1.2e-09 66.6 69 52.2
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.8e-09 65.5 61 54.1
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.2e-07 60.1 41 68.3
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 1.5e-07 59.7 40 67.5
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 2.0e-07 59.3 58 53.4
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.6e-07 58.9 55 61.8


User provided reference genes

Program Settings