Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 2.4e-146 522.3 293 100.0
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.9e-42 177.2 275 45.5
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.1e-41 173.7 316 43.4
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.7e-40 168.3 314 42.7
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-39 167.9 314 43.9
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.3e-39 166.4 313 39.0
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.1e-38 163.7 313 43.8
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 4.8e-38 162.5 320 37.8
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.1e-38 161.8 313 43.5
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.1e-37 161.4 307 43.6
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.1e-37 161.4 321 38.0
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.8e-37 160.6 307 43.3
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.8e-37 160.6 321 40.2
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.4e-37 160.2 313 42.5
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 6.9e-37 158.7 196 47.4
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 6.9e-37 158.7 321 36.1
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 6.9e-37 158.7 311 37.9
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 9.0e-37 158.3 321 36.1
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.8e-36 155.6 328 41.2
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.7e-35 154.1 314 36.6
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.2e-35 153.7 312 38.1
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.9e-35 153.3 330 41.8
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 2.9e-35 153.3 329 41.6
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 8.4e-35 151.8 301 34.2
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 5.5e-34 149.1 325 40.9
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 5.5e-34 149.1 300 39.7
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.1e-34 148.7 275 37.5
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.6e-33 147.5 303 35.3
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 2.7e-33 146.7 328 39.9
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.7e-33 146.7 317 36.3
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 4.6e-33 146.0 314 41.4
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 7.9e-33 145.2 315 39.7
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.9e-33 145.2 294 35.0
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 7.9e-33 145.2 330 36.7
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.0e-32 144.8 317 37.2
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.3e-32 144.4 320 37.2
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.8e-32 144.1 170 47.6
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 3.0e-32 143.3 343 38.2
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.0e-32 143.3 325 39.4
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 6.7e-32 142.1 318 39.0
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 8.7e-32 141.7 317 35.6
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.5e-31 141.0 323 41.8
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.5e-31 141.0 191 45.0
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.9e-31 140.6 314 39.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.3e-31 139.8 315 39.0
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.3e-30 137.9 326 38.3
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.7e-30 136.3 313 38.0
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.4e-29 134.4 308 33.1
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.8e-29 134.0 182 46.7
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 6.9e-29 132.1 317 39.1
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.2e-28 131.3 305 38.0
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.2e-28 131.3 317 38.8
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.6e-28 130.2 321 38.3
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.4e-28 129.8 323 35.0
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 4.5e-28 129.4 334 36.5
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 5.8e-28 129.0 200 43.5
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.0e-27 128.3 332 36.7
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.7e-27 127.5 184 48.9
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.7e-27 127.5 314 33.4
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.2e-27 127.1 314 32.5
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 6.5e-27 125.6 277 34.3
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 8.4e-27 125.2 277 33.9
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 1.9e-26 124.0 196 42.9
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.2e-25 121.3 308 31.8
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 2.7e-25 120.2 304 34.9
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.7e-25 120.2 310 38.7
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 4.6e-25 119.4 302 33.4
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.9e-25 118.6 315 31.4
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.0e-24 118.2 328 35.1
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 3.9e-24 116.3 325 31.7
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 8.7e-24 115.2 310 38.1
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.9e-23 114.0 308 38.3
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.5e-23 113.6 305 31.1
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 7.4e-23 112.1 322 37.3
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 9.7e-23 111.7 296 37.2
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.6e-22 110.9 184 38.0
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.6e-22 110.9 306 37.6
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 4.8e-22 109.4 327 37.0
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 8.2e-22 108.6 189 38.6
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.1e-21 108.2 158 40.5
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.4e-21 107.1 324 31.5
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.4e-21 107.1 327 30.6
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 4.1e-21 106.3 297 37.4
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.0e-20 104.0 178 41.0
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.4e-20 103.2 328 30.2
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 3.4e-20 103.2 324 35.8
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 7.7e-20 102.1 316 38.0
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.7e-19 100.9 180 36.1
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 6.5e-19 99.0 189 37.0
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 2.5e-18 97.1 195 39.0
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 9.4e-18 95.1 307 28.0
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-17 94.7 318 36.5
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-17 94.7 318 36.5
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.6e-17 94.4 318 36.5
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.6e-17 94.4 318 36.5
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.6e-17 94.4 315 33.7
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.6e-17 94.4 170 37.1
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 1.6e-17 94.4 167 37.7
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.1e-17 94.0 307 27.4
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 4.6e-17 92.8 316 31.6
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 4.6e-17 92.8 304 30.3
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 7.9e-17 92.0 322 35.7
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.4e-16 91.3 307 37.5
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.8e-16 90.9 325 36.6
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.8e-16 90.9 298 31.5
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 3.9e-16 89.7 328 28.7
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.5e-15 87.0 292 28.8
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 3.3e-15 86.7 324 35.2
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 3.3e-15 86.7 326 35.3
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.3e-15 86.7 253 30.0
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.3e-14 84.7 321 35.8
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.3e-14 84.7 91 49.5
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.8e-14 83.6 327 33.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 3.7e-14 83.2 315 36.2
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 4.8e-14 82.8 242 28.9
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.8e-13 80.9 326 33.4
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-13 80.9 318 34.6
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.8e-13 80.9 318 34.9
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.8e-13 80.9 287 27.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.8e-13 80.9 253 30.8
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.1e-13 80.1 192 31.2
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 5.3e-13 79.3 94 42.6
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 4.5e-12 76.3 315 34.3
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 5.9e-12 75.9 308 35.1
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 7.7e-12 75.5 288 26.4
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.3e-11 74.7 298 32.2
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.7e-11 74.3 126 36.5
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.7e-11 74.3 126 36.5
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.7e-11 74.3 126 36.5
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.7e-11 74.3 319 31.3
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.9e-11 73.6 126 37.3
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 6.5e-11 72.4 121 38.0
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 3.2e-10 70.1 233 35.6
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 4.2e-10 69.7 302 33.4
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 4.2e-10 69.7 314 26.4
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.2e-09 68.2 298 35.2
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.6e-09 67.8 149 33.6
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.7e-09 67.0 295 33.6
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 2.7e-09 67.0 270 30.0
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 4.7e-09 66.2 189 33.3
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 4.7e-09 66.2 48 58.3
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 7.9e-09 65.5 300 27.7
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 7.9e-09 65.5 309 27.5
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.4e-08 64.7 310 26.8
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 8.8e-08 62.0 154 33.1


User provided reference genes

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