Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 8.1e-219 763.5 387 100.0
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.3e-168 596.7 383 76.8
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 3.0e-165 585.5 387 76.5
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 8.8e-165 583.9 389 73.8
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 8.8e-165 583.9 387 74.9
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 2.6e-164 582.4 389 73.5
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 3.3e-164 582.0 386 75.1
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 3.3e-164 582.0 386 75.1
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.3e-163 580.1 383 75.7
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 1.3e-163 580.1 387 76.0
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.7e-163 579.7 387 75.7
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 4.8e-163 578.2 387 75.2
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 4.8e-163 578.2 386 73.3
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 2.4e-162 575.9 387 74.4
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 4.1e-162 575.1 390 74.4
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 1.2e-161 573.5 389 74.6
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.5e-161 573.2 387 73.4
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 5.9e-161 571.2 387 75.2
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 1.0e-160 570.5 387 73.1
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 1.0e-160 570.5 387 72.6
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 1.0e-160 570.5 385 74.5
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.9e-160 568.9 387 74.7
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 3.8e-160 568.5 384 71.9
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 6.5e-160 567.8 384 72.4
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 1.1e-159 567.0 387 73.1
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 1.4e-159 566.6 381 74.0
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 1.9e-159 566.2 387 72.6
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 3.2e-159 565.5 382 74.1
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 3.2e-159 565.5 383 74.2
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 4.2e-159 565.1 385 73.2
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 5.5e-159 564.7 389 73.3
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 9.4e-159 563.9 387 73.9
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 2.7e-158 562.4 386 72.8
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 3.6e-158 562.0 377 73.7
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 8.0e-158 560.8 381 75.1
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 1.0e-157 560.5 387 73.9
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 1.0e-157 560.5 387 72.6
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 1.4e-157 560.1 395 72.2
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 3.9e-157 558.5 387 72.4
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.9e-157 558.5 396 72.5
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 6.7e-157 557.8 390 72.6
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 1.5e-156 556.6 384 72.1
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.0e-156 556.2 386 71.5
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 4.4e-156 555.1 387 71.8
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 5.7e-156 554.7 387 69.5
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 5.7e-156 554.7 387 71.8
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 1.7e-155 553.1 384 70.8
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.2e-155 552.7 385 70.9
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 2.2e-155 552.7 386 71.8
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 2.2e-155 552.7 386 71.8
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 2.8e-155 552.4 385 72.2
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 4.8e-155 551.6 357 75.9
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 6.3e-155 551.2 387 72.1
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 6.3e-155 551.2 387 71.1
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 6.3e-155 551.2 386 69.9
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 1.1e-154 550.4 387 72.1
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 1.1e-154 550.4 387 71.8
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 2.4e-154 549.3 387 70.3
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 3.1e-154 548.9 394 69.8
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 2.0e-153 546.2 403 68.7
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 3.5e-153 545.4 386 69.9
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 3.5e-153 545.4 386 71.0
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.9e-151 539.7 384 69.5
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 9.4e-151 537.3 386 71.2
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.5e-148 530.0 391 68.0
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 2.6e-148 529.3 385 67.5
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 4.4e-148 528.5 384 70.1
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 9.7e-148 527.3 385 66.8
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 3.7e-147 525.4 380 67.4
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 2.4e-146 522.7 384 66.1
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 2.4e-146 522.7 381 67.5
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 2.4e-146 522.7 381 67.5
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 3.1e-146 522.3 519 55.9
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 3.1e-146 522.3 383 68.7
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 5.9e-145 518.1 385 66.0
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 1.3e-144 516.9 384 65.4
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 8.5e-144 514.2 386 65.5
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.5e-143 513.5 385 66.0
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 2.1e-142 509.6 348 71.8
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 3.6e-142 508.8 384 69.3
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 4.7e-142 508.4 381 66.1
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 6.1e-142 508.1 391 64.7
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 8.0e-142 507.7 387 64.9
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 5.7e-140 501.5 385 65.2
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 2.8e-139 499.2 377 65.5
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.8e-138 496.5 385 65.7
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 7.0e-138 494.6 429 61.3
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 1.2e-137 493.8 386 66.3
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 1.6e-137 493.4 387 65.6
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 7.7e-137 491.1 385 62.1
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 7.7e-137 491.1 387 65.6
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.1e-135 487.3 311 78.5
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 2.1e-134 483.0 382 64.1
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 2.1e-134 483.0 384 64.3
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.8e-134 482.6 386 62.2
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.2e-131 473.0 352 69.9
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 4.7e-126 455.3 310 72.9
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-117 427.6 291 73.5
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 2.0e-116 423.3 312 69.2
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 2.9e-115 419.5 385 59.2
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.9e-114 416.8 291 71.8
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 1.6e-113 413.7 382 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.0e-112 411.0 377 53.8
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.3e-112 410.6 307 68.7
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 3.0e-112 409.5 333 66.1
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 7.5e-108 394.8 265 74.0
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.5e-103 380.6 407 48.9
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 3.6e-102 375.9 380 51.8
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 8.1e-102 374.8 383 49.9
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 7.1e-98 361.7 390 54.4
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 1.2e-94 350.9 267 66.3
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.4e-93 347.4 235 73.2
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 6.6e-88 328.6 272 62.5
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 9.9e-84 314.7 235 69.8
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 8.2e-62 241.9 223 56.1
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 7.7e-60 235.3 149 75.8
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 2.7e-57 226.9 423 35.7
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 4.6e-57 226.1 427 37.5
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 4.6e-57 226.1 153 72.5
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 5.1e-56 222.6 397 35.3
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.9e-50 204.1 171 58.5
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 7.0e-45 185.7 116 77.6
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.0e-32 143.3 107 64.5
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 2.0e-31 141.0 183 41.0
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 2.2e-22 110.9 147 49.0
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.4e-21 108.2 190 35.3
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 7.0e-21 105.9 67 79.1
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 8.6e-19 99.0 149 38.9
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 5.5e-18 96.3 84 64.3
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.0e-16 92.0 60 71.7
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 7.0e-13 79.3 111 39.6
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 1.5e-10 71.6 36 91.7
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.5e-10 70.9 70 50.0
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-09 66.6 71 47.9
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.8e-08 64.7 36 83.3
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 2.9e-06 57.4 111 32.4


User provided reference genes

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