Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 9.7e-162 573.5 316 100.0
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.3e-110 403.7 314 68.2
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 5.6e-109 398.3 316 67.7
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 6.8e-107 391.3 317 67.5
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.2e-106 390.6 317 65.9
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 2.0e-106 389.8 316 66.8
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 3.4e-106 389.0 301 68.1
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 3.4e-106 389.0 301 68.1
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 4.4e-106 388.7 307 66.1
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 4.4e-106 388.7 292 68.5
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 7.5e-106 387.9 301 66.4
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 6.4e-105 384.8 307 66.1
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.3e-105 384.4 251 76.9
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 8.3e-105 384.4 318 67.9
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 3.2e-104 382.5 303 68.0
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 7.1e-104 381.3 304 65.5
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 9.2e-104 380.9 303 64.4
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 9.2e-104 380.9 299 67.2
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 9.2e-104 380.9 314 66.6
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.7e-103 379.4 314 64.6
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 3.5e-103 379.0 316 63.0
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 3.5e-103 379.0 254 74.0
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 6.0e-103 378.3 306 64.7
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 6.0e-103 378.3 290 67.9
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 6.0e-103 378.3 299 65.9
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 7.8e-103 377.9 319 64.6
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 1.0e-102 377.5 253 73.5
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.0e-102 377.5 316 65.2
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-102 377.1 303 64.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.3e-102 377.1 303 64.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.3e-102 377.1 316 63.0
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.7e-102 376.7 314 62.7
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.3e-102 376.3 317 63.7
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 2.3e-102 376.3 313 65.2
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 3.0e-102 375.9 316 63.6
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 3.9e-102 375.6 314 62.7
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 3.9e-102 375.6 314 62.7
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 5.1e-102 375.2 302 64.6
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 6.6e-102 374.8 254 74.0
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 8.6e-102 374.4 320 63.4
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.1e-101 374.0 307 66.1
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.1e-101 374.0 251 74.1
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.1e-101 374.0 322 63.7
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.5e-101 373.6 255 72.2
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-101 373.6 255 72.2
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.5e-101 373.6 255 72.2
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.9e-101 373.2 314 64.3
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 2.5e-101 372.9 317 63.1
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 2.5e-101 372.9 316 64.2
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 4.3e-101 372.1 321 63.2
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 5.6e-101 371.7 256 71.9
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.6e-101 371.7 314 64.6
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 5.6e-101 371.7 332 62.3
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 7.3e-101 371.3 312 64.7
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 9.5e-101 370.9 302 65.9
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-100 370.5 253 71.1
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.2e-100 370.5 321 63.9
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.6e-100 370.2 321 62.9
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.1e-100 369.8 254 72.0
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 2.1e-100 369.8 306 64.1
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 2.1e-100 369.8 340 60.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.8e-100 369.4 315 64.8
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.8e-100 369.4 311 65.3
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.8e-100 369.4 311 65.3
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 3.6e-100 369.0 251 71.3
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 6.2e-100 368.2 254 73.2
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.1e-99 367.5 311 65.0
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.4e-99 367.1 251 73.3
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.8e-99 366.7 309 64.4
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 1.8e-99 366.7 249 73.1
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 6.8e-99 364.8 301 63.8
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.8e-99 364.8 301 65.4
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.5e-98 363.6 319 61.8
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.0e-98 363.2 254 70.5
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 3.4e-98 362.5 255 72.2
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 7.6e-98 361.3 249 71.9
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 9.9e-98 360.9 255 71.8
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.9e-98 360.9 291 66.7
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.3e-97 360.5 251 70.5
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.7e-97 360.1 249 71.5
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.7e-97 360.1 253 71.5
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 3.7e-97 359.0 235 72.3
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.3e-97 357.8 255 69.4
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.9e-96 356.7 255 71.0
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.4e-96 356.3 321 60.7
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.4e-96 356.3 295 64.7
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.2e-96 355.9 255 69.0
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.2e-96 355.9 325 62.5
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 9.2e-96 354.4 253 70.0
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 9.2e-96 354.4 321 60.4
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.6e-95 353.6 318 60.4
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.1e-95 353.2 323 61.3
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.0e-94 350.9 328 60.4
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.9e-94 349.0 321 61.1
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 3.9e-94 349.0 264 67.8
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 5.1e-94 348.6 309 64.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 5.1e-94 348.6 309 64.1
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.5e-93 346.3 254 65.0
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.6e-92 343.6 257 68.9
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 3.6e-92 342.4 254 64.2
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 4.7e-92 342.0 252 69.8
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.1e-91 340.9 221 73.3
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.1e-91 340.9 286 63.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.4e-91 340.5 271 66.8
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 5.2e-91 338.6 287 62.4
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.0e-90 336.7 320 58.1
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 5.8e-90 335.1 237 69.2
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 2.4e-88 329.7 234 70.9
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 3.2e-88 329.3 307 59.0
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 7.3e-85 318.2 254 64.6
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 9.6e-85 317.8 251 65.7
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.6e-84 317.0 324 54.3
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.2e-82 310.8 253 60.9
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 9.9e-82 307.8 250 63.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 9.9e-82 307.8 229 69.0
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.3e-81 307.4 253 64.4
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 2.7e-79 299.7 301 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 4.6e-79 298.9 255 61.2
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 5.1e-78 295.4 239 61.1
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.1e-76 290.0 232 62.9
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.2e-73 280.0 239 58.2
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 3.2e-72 276.2 296 50.3
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 4.3e-69 265.8 192 67.7
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.0e-67 258.1 252 53.6
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.5e-66 255.8 221 62.9
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 2.2e-65 253.4 173 71.7
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.1e-64 251.1 264 51.1
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.0e-62 244.6 142 83.8
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.0e-62 243.0 213 56.3
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.7e-62 241.5 167 70.1
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.6e-60 237.3 142 81.0
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.6e-60 237.3 142 79.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 2.2e-52 210.3 272 47.4
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 3.2e-48 196.4 114 84.2
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 3.6e-47 193.0 114 81.6
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-46 191.0 239 44.8
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.7e-46 188.7 182 56.6
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.2e-42 177.9 127 67.7
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 4.5e-42 176.0 232 46.1
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.2e-41 173.7 225 45.8
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-39 167.5 138 62.3
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.1e-35 154.8 242 41.3
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 3.8e-33 146.4 247 39.7
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 6.3e-28 129.0 84 72.6
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-24 118.2 82 68.3
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.5e-24 117.9 86 66.3
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.9e-24 117.5 130 49.2
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 3.0e-22 110.2 160 45.6
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.4e-21 106.7 61 77.0
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 4.8e-20 102.8 177 35.6
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 3.8e-17 93.2 72 61.1
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 5.0e-17 92.8 62 71.0
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.5e-16 91.3 268 25.7
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 1.9e-16 90.9 197 37.1
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.2e-16 90.1 50 86.0
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 7.2e-16 89.0 270 25.9
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 4.0e-14 83.2 142 31.0
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 4.4e-13 79.7 134 42.5
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 1.1e-11 75.1 157 27.4
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 5.9e-10 69.3 156 30.1
Cre01.g005950 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D018306 4.7e-07 59.7 189 30.2
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 1.0e-06 58.5 40 70.0
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 1.0e-06 58.5 40 70.0
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 3.0e-06 57.0 167 24.6
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 4.0e-06 56.6 165 24.8
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 5.2e-06 56.2 165 24.8


User provided reference genes

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