Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.6e-175 619.4 321 100.0
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.5e-151 538.5 311 88.4
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 1.5e-149 533.1 311 86.5
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 9.5e-149 530.4 316 83.5
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 2.8e-148 528.9 311 86.2
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 3.1e-147 525.4 317 83.0
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 8.9e-147 523.9 317 82.6
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.2e-146 523.5 317 82.6
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.4e-146 521.9 317 82.6
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 4.4e-146 521.5 318 82.1
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 4.4e-146 521.5 315 82.9
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 5.8e-146 521.2 317 82.3
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.3e-145 520.0 317 81.7
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 3.8e-145 518.5 317 82.3
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 4.9e-145 518.1 317 83.0
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 4.9e-145 518.1 317 82.3
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 6.4e-145 517.7 317 82.6
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 8.4e-145 517.3 317 81.1
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 8.4e-145 517.3 316 81.6
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 8.4e-145 517.3 316 82.0
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.4e-144 516.5 317 81.4
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 2.4e-144 515.8 317 81.1
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.2e-144 515.4 317 81.7
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 4.2e-144 515.0 317 82.3
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 4.2e-144 515.0 317 80.8
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 4.2e-144 515.0 315 82.2
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 4.2e-144 515.0 317 80.8
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 5.4e-144 514.6 316 81.0
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 5.4e-144 514.6 316 81.3
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 7.1e-144 514.2 317 80.1
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.6e-143 513.1 317 81.1
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.6e-143 513.1 353 77.6
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.6e-143 513.1 317 80.8
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.6e-143 513.1 317 82.0
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.6e-143 513.1 317 81.4
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 2.1e-143 512.7 317 80.8
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 4.6e-143 511.5 317 82.0
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 6.0e-143 511.1 317 81.4
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.0e-142 510.4 324 79.3
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.3e-142 509.2 318 80.8
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 2.3e-142 509.2 317 80.4
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 2.5e-141 505.8 317 79.5
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.3e-141 505.0 324 78.4
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 5.6e-141 504.6 308 84.1
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 5.6e-141 504.6 315 79.7
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 5.6e-141 504.6 316 80.1
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 7.3e-141 504.2 316 79.7
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 7.3e-141 504.2 316 79.7
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.6e-141 503.8 316 79.4
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.6e-140 503.1 316 80.4
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 2.1e-140 502.7 316 79.7
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 2.8e-140 502.3 316 79.1
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 3.6e-140 501.9 316 79.4
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 6.2e-140 501.1 316 79.4
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 6.2e-140 501.1 317 80.1
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 6.2e-140 501.1 334 77.2
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 8.1e-140 500.7 317 79.8
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 1.1e-139 500.4 316 79.1
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.8e-139 499.6 313 80.5
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 2.4e-139 499.2 315 79.7
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 3.1e-139 498.8 316 78.5
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 3.1e-139 498.8 320 78.4
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 3.1e-139 498.8 311 81.4
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 5.3e-139 498.0 311 81.0
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 5.3e-139 498.0 317 79.5
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 5.3e-139 498.0 316 79.4
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.9e-139 497.7 342 74.3
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 9.0e-139 497.3 316 79.4
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.2e-138 496.9 351 72.4
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 1.5e-138 496.5 316 79.1
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 2.6e-138 495.7 378 69.3
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 5.8e-138 494.6 316 78.8
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 7.6e-138 494.2 316 78.8
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 7.6e-138 494.2 311 80.1
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 1.7e-137 493.0 316 78.5
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 1.7e-137 493.0 316 78.5
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.2e-137 492.7 326 76.7
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 6.4e-137 491.1 317 78.2
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 6.6e-134 481.1 321 73.2
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 3.3e-133 478.8 320 73.8
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 1.9e-128 463.0 282 81.6
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.2e-127 460.3 317 74.4
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.5e-127 458.8 284 79.9
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 3.5e-127 458.8 320 72.5
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.9e-125 453.0 285 79.3
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 4.3e-125 451.8 318 74.5
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 5.6e-125 451.4 287 80.5
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 6.2e-124 448.0 319 74.9
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 3.4e-122 442.2 271 81.2
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.4e-121 438.0 371 63.6
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 7.1e-120 434.5 323 70.6
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.8e-118 429.9 317 71.0
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 1.1e-117 427.2 262 80.5
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.1e-117 427.2 264 79.9
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 2.2e-113 412.9 317 70.7
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 4.9e-113 411.8 314 66.2
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 7.1e-112 407.9 303 66.7
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.2e-111 407.1 263 76.0
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.2e-108 396.4 314 64.6
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 8.2e-108 394.4 317 66.2
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.6e-106 389.4 242 81.8
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 3.4e-106 389.0 326 64.7
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 8.5e-105 384.4 255 74.5
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.7e-97 360.1 221 80.5
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.6e-90 336.3 219 75.8
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.9e-89 332.8 303 57.4
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.5e-85 320.5 306 54.2
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.4e-83 313.9 308 56.2
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 7.7e-82 308.1 192 81.2
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.7e-81 307.0 230 64.8
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.8e-78 297.0 187 79.7
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.6e-74 283.9 220 65.5
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 2.4e-67 260.0 167 80.2
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 5.5e-64 248.8 194 63.9
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.5e-58 229.6 277 48.4
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.9e-57 226.5 318 44.7
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.9e-57 226.1 151 73.5
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 2.6e-53 213.4 160 67.5
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 9.8e-45 184.9 242 49.6
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 2.2e-44 183.7 124 73.4
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.2e-37 161.4 128 64.1
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.6e-37 160.2 280 34.3
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 8.3e-36 155.2 266 39.5
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 4.1e-35 152.9 110 65.5
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 4.6e-34 149.4 96 68.8
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.7e-33 147.5 262 38.9
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.6e-32 141.7 85 78.8
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 2.4e-30 137.1 243 40.7
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 1.3e-28 131.3 101 68.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 4.3e-24 116.3 81 70.4
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.9e-19 100.9 109 51.4
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.8e-18 95.5 59 83.1
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.0e-17 93.6 70 70.0
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 5.1e-17 92.8 140 42.9
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 5.1e-17 92.8 54 72.2
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 8.7e-17 92.0 56 75.0
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.3e-16 90.1 88 59.1
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 6.9e-14 82.4 62 62.9
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 5.8e-13 79.3 55 65.5
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.8e-12 76.6 43 79.1
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 6.2e-07 59.3 48 60.4


User provided reference genes

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