Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 9.7e-92 340.1 170 100.0
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.4e-77 293.1 168 81.5
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 8.8e-77 290.4 170 81.8
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 2.6e-76 288.9 170 81.2
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.6e-76 288.9 170 81.2
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.6e-76 288.9 170 85.3
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 3.3e-76 288.5 176 82.4
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 7.5e-76 287.3 170 80.0
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 9.7e-76 287.0 170 80.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.2e-75 285.8 163 82.8
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.2e-75 285.8 163 83.4
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.2e-75 285.8 171 81.9
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.8e-75 285.4 178 80.9
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.8e-75 285.4 170 81.8
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 6.3e-75 284.3 170 80.6
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 6.3e-75 284.3 165 81.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 6.3e-75 284.3 170 79.4
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.3e-75 284.3 170 80.6
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 6.3e-75 284.3 170 79.4
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 8.2e-75 283.9 178 79.8
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 8.2e-75 283.9 170 82.4
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.1e-74 283.5 163 82.2
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-74 283.5 171 79.5
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.4e-74 283.1 170 80.0
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.4e-74 283.1 163 82.2
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.4e-74 283.1 170 80.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.4e-74 283.1 170 81.8
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.8e-74 282.7 169 79.9
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 2.4e-74 282.3 170 79.4
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-74 282.3 170 79.4
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-74 282.3 170 79.4
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.4e-74 282.3 170 79.4
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.4e-74 282.3 168 81.0
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.4e-74 282.3 170 80.6
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 3.1e-74 282.0 163 81.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 3.1e-74 282.0 163 81.6
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 3.1e-74 282.0 170 80.0
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 3.1e-74 282.0 170 79.4
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.1e-74 282.0 174 81.0
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 3.1e-74 282.0 169 81.1
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 3.1e-74 282.0 170 78.2
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 4.1e-74 281.6 164 82.9
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 4.1e-74 281.6 170 80.6
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.1e-74 281.6 170 80.6
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.1e-74 281.6 169 80.5
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.1e-74 281.6 169 80.5
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.1e-74 281.6 170 80.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 7.0e-74 280.8 170 78.8
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 9.1e-74 280.4 169 82.2
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.2e-73 280.0 174 81.6
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.2e-73 280.0 171 78.4
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.6e-73 279.6 153 86.3
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.6e-73 279.6 168 81.5
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-73 279.6 170 80.0
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-73 279.6 170 80.0
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 2.0e-73 279.3 170 77.6
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.0e-73 279.3 166 80.1
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 3.5e-73 278.5 170 80.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 4.5e-73 278.1 170 77.1
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.5e-73 278.1 170 79.4
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 4.5e-73 278.1 178 76.4
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 5.9e-73 277.7 167 81.4
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.9e-73 277.7 172 79.7
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 5.9e-73 277.7 174 81.6
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 7.7e-73 277.3 178 77.0
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 7.7e-73 277.3 170 78.2
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.0e-72 276.9 173 79.2
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.0e-72 276.9 174 80.5
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.3e-72 276.6 178 78.1
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.3e-72 276.6 168 79.2
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-72 276.6 170 78.8
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-72 276.6 170 78.8
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.3e-72 276.6 168 79.2
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.7e-72 276.2 164 81.1
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.2e-72 275.8 168 80.4
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 2.2e-72 275.8 170 79.4
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 2.2e-72 275.8 174 79.9
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.9e-72 275.4 157 84.1
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.9e-72 275.4 171 80.1
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 3.8e-72 275.0 170 78.8
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 3.8e-72 275.0 168 78.0
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 3.8e-72 275.0 170 78.2
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 3.8e-72 275.0 170 77.6
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.0e-72 274.6 169 80.5
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 5.0e-72 274.6 177 77.4
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 6.5e-72 274.2 178 77.0
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 6.5e-72 274.2 170 78.2
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 6.5e-72 274.2 153 85.6
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 6.5e-72 274.2 167 80.2
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.1e-71 273.5 176 77.3
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.5e-71 273.1 151 84.1
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.9e-71 272.7 170 77.6
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.5e-71 272.3 172 79.7
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 3.2e-71 271.9 167 79.6
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.2e-71 271.9 173 76.9
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 4.2e-71 271.6 175 78.3
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 5.5e-71 271.2 168 78.6
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 7.2e-71 270.8 173 78.6
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 9.4e-71 270.4 170 77.1
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 9.4e-71 270.4 170 77.1
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.6e-70 269.6 175 77.7
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.6e-70 269.6 175 78.9
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 80.0
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 2.1e-70 269.2 168 79.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 2.1e-70 269.2 171 77.8
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.1e-70 269.2 155 86.5
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 3.6e-70 268.5 177 75.1
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 3.6e-70 268.5 177 75.1
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 6.1e-70 267.7 167 77.8
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.0e-69 266.9 170 75.9
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.0e-69 266.9 170 75.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.0e-69 266.9 158 81.6
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.4e-69 266.5 173 78.6
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.3e-69 265.8 176 73.9
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 5.2e-69 264.6 146 86.3
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 5.2e-69 264.6 162 79.0
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.4e-68 261.5 160 78.8
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.5e-68 260.8 162 76.5
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 2.2e-67 259.2 173 75.1
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 2.2e-67 259.2 173 75.1
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.4e-66 256.5 151 80.1
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.8e-66 256.1 172 72.1
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.6e-65 253.1 169 71.6
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.6e-65 253.1 228 59.6
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.7e-65 252.3 170 72.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 3.5e-65 251.9 166 74.7
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 4.5e-65 251.5 151 77.5
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 7.7e-65 250.8 172 72.1
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.7e-64 249.6 166 72.9
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.9e-64 248.8 160 76.2
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.5e-63 246.5 160 75.0
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.5e-63 245.7 149 77.2
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 3.2e-63 245.4 156 75.0
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 4.2e-63 245.0 166 72.3
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.5e-60 236.5 167 72.5
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 9.8e-60 233.8 147 77.6
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.8e-58 229.6 159 67.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.4e-58 229.2 138 75.4
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 3.1e-58 228.8 138 75.4
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 5.9e-57 224.6 127 82.7
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.1e-55 220.3 170 64.7
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.6e-54 215.3 128 78.9
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 5.2e-53 211.5 166 60.2
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.7e-51 206.5 132 74.2
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 3.3e-47 192.2 111 79.3
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 7.5e-44 181.0 134 63.4
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 6.4e-43 177.9 171 57.9
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.4e-42 176.0 134 61.9
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 9.2e-42 174.1 195 50.8
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.2e-41 173.7 133 58.6
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.6e-41 173.3 134 59.7
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.3e-40 170.2 108 81.5
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.0e-40 169.1 170 57.1
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.2e-33 147.1 91 78.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-33 146.4 88 83.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.0e-32 144.1 86 83.7
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.6e-30 136.7 120 52.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.6e-28 127.9 105 68.6
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 9.2e-26 120.9 103 59.2
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.3e-24 117.1 98 62.2
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 5.1e-24 115.2 170 42.4
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-23 113.2 175 38.3
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.1e-22 109.8 142 38.7
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 2.8e-22 109.4 56 85.7
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.2e-22 108.2 133 42.1
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.2e-22 108.2 133 42.1
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-21 106.3 68 67.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 3.1e-21 105.9 71 71.8
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.1e-17 93.2 65 63.1
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 7.8e-17 91.3 68 67.6
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 7.8e-17 91.3 100 44.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 7.8e-17 91.3 100 44.0
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.6e-14 82.4 55 70.9
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 6.9e-13 78.2 95 38.9
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 3.4e-12 75.9 95 45.3
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 6.4e-11 71.6 47 57.4
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 2.8e-06 56.2 97 39.2


User provided reference genes

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