Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 5.4e-51 204.1 110 100.0
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.9e-20 102.1 92 64.1
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 4.9e-20 101.3 103 57.3
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 4.1e-19 98.2 90 61.1
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 5.4e-19 97.8 93 52.7
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 9.2e-19 97.1 80 67.5
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.6e-18 96.3 81 66.7
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 1.6e-18 96.3 86 61.6
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.5e-18 95.1 90 57.8
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 4.6e-18 94.7 86 60.5
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 6.0e-18 94.4 87 63.2
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 6.0e-18 94.4 114 50.0
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.0e-17 93.6 90 57.8
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.0e-17 93.6 90 57.8
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.7e-17 92.8 114 50.0
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.0e-17 92.0 83 62.7
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 3.0e-17 92.0 89 57.3
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 3.0e-17 92.0 80 66.2
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.9e-17 91.7 83 62.7
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.9e-17 91.7 83 62.7
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.9e-17 91.7 96 55.2
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.9e-17 91.7 103 52.4
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 5.1e-17 91.3 83 62.7
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 6.6e-17 90.9 89 57.3
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 6.6e-17 90.9 109 51.4
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 8.7e-17 90.5 83 61.4
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.1e-16 90.1 84 59.5
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.1e-16 90.1 82 61.0
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 1.5e-16 89.7 90 56.7
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 1.9e-16 89.4 83 60.2
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.5e-16 89.0 90 54.4
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 3.3e-16 88.6 88 61.4
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 3.3e-16 88.6 86 57.0
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.3e-16 88.2 90 55.6
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 4.3e-16 88.2 90 53.3
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.6e-16 87.8 112 50.9
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 7.3e-16 87.4 87 55.2
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 9.6e-16 87.0 83 61.4
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 9.6e-16 87.0 83 60.2
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.6e-15 86.3 89 55.1
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.6e-15 86.3 84 59.5
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 2.1e-15 85.9 83 61.4
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 2.1e-15 85.9 86 57.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 2.1e-15 85.9 84 56.0
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 3.6e-15 85.1 84 59.5
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 4.7e-15 84.7 78 59.0
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.7e-15 84.7 79 60.8
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 4.7e-15 84.7 82 57.3
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 4.7e-15 84.7 82 56.1
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 4.7e-15 84.7 99 50.5
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 4.7e-15 84.7 84 56.0
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 4.7e-15 84.7 83 55.4
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.7e-15 84.7 84 58.3
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 6.2e-15 84.3 85 56.5
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 6.2e-15 84.3 101 48.5
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 8.1e-15 84.0 88 55.7
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 8.1e-15 84.0 88 55.7
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 8.1e-15 84.0 79 59.5
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.1e-14 83.6 83 61.4
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 83 60.2
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 83 60.2
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 1.1e-14 83.6 83 55.4
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.4e-14 83.2 80 57.5
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.8e-14 82.8 79 58.2
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 2.4e-14 82.4 84 57.1
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.4e-14 82.4 86 55.8
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 4.0e-14 81.6 87 56.3
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 5.2e-14 81.3 86 57.0
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.2e-14 81.3 86 55.8
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.2e-14 81.3 80 57.5
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 6.9e-14 80.9 81 56.8
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.2e-13 80.1 90 51.1
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.2e-13 80.1 84 52.4
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.2e-13 80.1 77 62.3
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.2e-13 80.1 83 56.6
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.5e-13 79.7 93 49.5
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.0e-13 79.3 86 54.7
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.0e-13 79.3 86 54.7
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.0e-13 79.3 84 54.8
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.4e-13 78.6 86 52.3
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 3.4e-13 78.6 95 51.6
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.4e-13 78.2 79 58.2
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 4.4e-13 78.2 74 63.5
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 5.8e-13 77.8 73 58.9
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 5.8e-13 77.8 74 63.5
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 9.9e-13 77.0 83 56.6
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.7e-12 76.3 86 52.3
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.2e-12 75.9 79 57.0
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 3.8e-12 75.1 80 57.5
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 3.8e-12 75.1 83 49.4
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.8e-12 75.1 86 53.5
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 6.4e-12 74.3 74 55.4
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.4e-12 74.3 113 44.2
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.1e-11 73.6 65 60.0
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.4e-11 73.2 77 53.2
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.4e-11 73.2 80 58.8
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.9e-11 72.8 79 55.7
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.9e-11 72.8 58 67.2
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.4e-11 72.4 84 53.6
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 2.4e-11 72.4 83 53.0
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 2.4e-11 72.4 82 50.0
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 3.2e-11 72.0 79 50.6
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.2e-11 71.6 88 50.0
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 4.2e-11 71.6 80 56.2
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 4.2e-11 71.6 66 57.6
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 5.4e-11 71.2 73 53.4
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 1.2e-10 70.1 91 51.6
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.6e-10 69.7 86 48.8
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.1e-10 69.3 86 47.7
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.7e-10 68.9 74 54.1
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.7e-10 68.9 85 52.9
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.7e-10 68.9 83 51.8
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.6e-10 68.2 74 54.1
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 6.0e-10 67.8 86 51.2
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 6.0e-10 67.8 86 51.2
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.8e-10 67.4 74 51.4
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 7.8e-10 67.4 83 53.0
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 7.8e-10 67.4 75 56.0
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 1.7e-09 66.2 85 43.5
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 2.3e-09 65.9 75 52.0
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.0e-09 65.5 74 51.4
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 3.0e-09 65.5 86 46.5
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 8.7e-09 63.9 54 61.1
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 8.7e-09 63.9 101 43.6
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 8.7e-09 63.9 87 44.8
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.1e-08 63.5 74 50.0
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.1e-08 63.5 74 50.0
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.9e-08 62.8 67 49.3
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.9e-08 62.8 74 50.0
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.5e-08 62.4 80 50.0
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 3.3e-08 62.0 74 50.0
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.3e-08 62.0 100 44.0
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.6e-08 61.2 74 50.0
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 5.6e-08 61.2 97 41.2
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 5.6e-08 61.2 82 45.1
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 5.6e-08 61.2 114 42.1
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 9.6e-08 60.5 74 45.9
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.3e-07 60.1 75 48.0
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.3e-07 60.1 74 47.3
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.3e-07 60.1 74 48.6
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 2.1e-07 59.3 74 50.0
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 2.8e-07 58.9 74 50.0
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 2.8e-07 58.9 77 44.2
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 3.6e-07 58.5 74 48.6
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 4.8e-07 58.2 74 47.3
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.8e-07 58.2 74 47.3
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 48.6
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 45.9
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 47.3
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 47.3
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 47.3
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 48.6
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 47.3
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 48.6
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 6.2e-07 57.8 74 47.3
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 6.2e-07 57.8 114 41.2
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 8.1e-07 57.4 74 47.3
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 8.1e-07 57.4 84 42.9
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 8.1e-07 57.4 74 47.3
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 8.1e-07 57.4 74 47.3
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 8.1e-07 57.4 55 58.2
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 8.1e-07 57.4 74 48.6
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.1e-06 57.0 74 45.9
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.4e-06 56.6 74 45.9
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 1.4e-06 56.6 74 47.3
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 1.4e-06 56.6 74 47.3
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-06 56.6 74 47.3
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.4e-06 56.6 74 45.9
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 1.4e-06 56.6 74 47.3
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.4e-06 56.6 74 45.9
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 1.4e-06 56.6 57 59.6
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.4e-06 56.6 74 47.3
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.4e-06 56.6 79 48.1
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 1.8e-06 56.2 74 47.3
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 1.8e-06 56.2 74 47.3
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 2.4e-06 55.8 74 45.9
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 2.4e-06 55.8 74 45.9
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 3.1e-06 55.5 101 40.6
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 3.1e-06 55.5 111 40.5


User provided reference genes

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