Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.0e-120 436.8 223 100.0
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 3.4e-113 411.8 222 92.8
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.1e-111 406.8 222 91.0
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 3.2e-111 405.2 222 90.5
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.1e-110 402.5 222 90.5
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.1e-110 402.5 222 90.5
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 6.1e-110 401.0 222 90.1
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 6.1e-110 401.0 221 91.4
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.0e-109 400.2 222 91.4
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 1.4e-109 399.8 222 90.5
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.4e-109 399.8 222 90.5
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.4e-109 399.8 222 89.6
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.4e-109 399.8 222 89.6
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.8e-109 399.4 222 89.6
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 2.3e-109 399.1 222 91.0
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.3e-109 399.1 222 90.1
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.3e-109 399.1 222 90.1
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 2.3e-109 399.1 222 89.6
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.3e-109 399.1 222 90.1
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 3.9e-109 398.3 222 89.2
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 3.9e-109 398.3 222 89.6
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 3.9e-109 398.3 222 88.7
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 3.9e-109 398.3 222 90.1
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 5.1e-109 397.9 222 90.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 6.7e-109 397.5 222 89.2
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 8.8e-109 397.1 222 90.5
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.1e-108 396.7 222 89.6
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.1e-108 396.7 221 89.6
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 1.5e-108 396.4 222 90.1
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.0e-108 396.0 222 89.2
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 2.5e-108 395.6 222 88.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.5e-108 395.6 222 88.7
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 3.3e-108 395.2 222 88.7
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 3.3e-108 395.2 222 89.6
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 4.3e-108 394.8 222 89.2
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.3e-108 394.8 222 89.2
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 4.3e-108 394.8 221 88.7
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 4.3e-108 394.8 222 88.7
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 5.7e-108 394.4 222 88.7
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 7.4e-108 394.0 221 89.1
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 7.4e-108 394.0 222 88.3
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 9.7e-108 393.7 222 87.8
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.3e-107 393.3 222 88.3
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.3e-107 393.3 222 89.2
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.7e-107 392.9 222 88.3
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 2.2e-107 392.5 222 88.3
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.2e-107 392.5 222 88.7
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.8e-107 392.1 222 89.2
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 88.3
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 3.7e-107 391.7 221 88.2
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 89.2
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 89.2
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 3.7e-107 391.7 222 87.8
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.8e-107 391.3 222 87.4
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 4.8e-107 391.3 222 88.7
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 6.3e-107 391.0 222 87.8
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 6.3e-107 391.0 222 87.8
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 6.3e-107 391.0 222 87.4
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 6.3e-107 391.0 222 87.4
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 8.2e-107 390.6 222 88.3
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 8.2e-107 390.6 222 87.4
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 8.2e-107 390.6 222 87.4
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 8.2e-107 390.6 221 90.0
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.1e-106 390.2 219 89.5
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.1e-106 390.2 222 88.7
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-106 390.2 222 87.4
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-106 390.2 222 87.4
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.1e-106 390.2 222 87.4
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.1e-106 390.2 226 86.7
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.4e-106 389.8 222 87.4
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.4e-106 389.8 222 86.9
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.4e-106 389.8 222 86.9
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.4e-106 389.8 222 86.9
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.4e-106 389.8 222 87.4
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.8e-106 389.4 222 87.4
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 2.4e-106 389.0 222 87.8
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.1e-106 388.7 222 87.8
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 3.1e-106 388.7 222 87.4
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 3.1e-106 388.7 222 86.5
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 4.1e-106 388.3 222 87.8
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 4.1e-106 388.3 222 86.5
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 4.1e-106 388.3 222 87.8
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 4.1e-106 388.3 221 87.3
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 4.1e-106 388.3 222 86.9
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 5.3e-106 387.9 222 86.5
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 6.9e-106 387.5 222 86.5
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 6.9e-106 387.5 222 87.4
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 9.1e-106 387.1 222 87.4
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.2e-105 386.7 222 87.8
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.2e-105 386.7 222 87.4
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 1.2e-105 386.7 222 86.5
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.0e-105 386.0 222 88.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.0e-105 386.0 246 80.9
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 3.4e-105 385.2 221 86.9
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 3.4e-105 385.2 221 86.9
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 3.4e-105 385.2 222 86.9
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 3.4e-105 385.2 222 86.5
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 4.5e-105 384.8 222 87.4
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 4.5e-105 384.8 222 84.7
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 4.5e-105 384.8 222 85.1
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 7.7e-105 384.0 221 86.9
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.0e-104 383.6 220 87.3
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.0e-104 383.6 220 87.3
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.0e-104 383.6 222 86.9
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.0e-104 383.6 222 87.4
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.3e-104 383.3 222 86.0
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.3e-104 383.3 222 86.0
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.3e-104 383.3 230 84.8
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.2e-104 382.5 222 85.6
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 2.2e-104 382.5 222 84.2
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.0e-104 381.3 222 86.0
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 3.2e-103 378.6 222 83.8
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 3.2e-103 378.6 225 85.3
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 2.1e-102 375.9 222 83.8
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 6.1e-102 374.4 222 83.8
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 6.1e-102 374.4 222 85.1
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.9e-101 371.7 222 84.2
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 5.1e-101 371.3 222 81.5
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 8.8e-101 370.5 222 82.4
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.7e-99 365.2 222 80.6
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 3.7e-99 365.2 222 80.6
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 6.3e-99 364.4 222 80.2
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 2.0e-97 359.4 222 81.5
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.7e-96 356.3 222 80.6
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 3.2e-95 352.1 237 77.2
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 6.1e-94 347.8 318 60.7
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 3.0e-93 345.5 222 77.9
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 3.0e-93 345.5 222 75.2
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 6.7e-93 344.4 230 77.0
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 3.7e-91 338.6 222 77.0
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 3.7e-91 338.6 222 77.0
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 9.1e-90 334.0 222 76.6
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.5e-89 332.0 222 78.4
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 2.9e-88 328.9 222 74.3
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.1e-87 327.0 182 89.6
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.1e-86 322.8 224 73.7
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.7e-86 321.6 222 76.6
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 2.3e-85 319.3 174 90.2
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.2e-83 312.8 272 65.8
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.1e-82 310.5 222 74.3
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.4e-82 310.1 241 71.4
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 3.1e-82 308.9 162 92.0
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.0e-76 289.7 158 88.0
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 9.8e-76 287.3 156 87.8
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 5.6e-71 271.6 222 61.3
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 5.8e-60 235.0 143 85.3
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.1e-58 230.7 142 83.8
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 2.4e-58 229.6 122 90.2
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.2e-54 214.9 135 82.2
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 8.1e-54 214.5 195 56.9
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.7e-43 180.3 203 52.2
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 9.2e-42 174.5 109 80.7
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 3.3e-39 166.0 103 80.6
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.4e-37 159.8 79 93.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 3.8e-35 152.5 100 81.0
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.7e-32 143.7 74 90.5
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 8.7e-32 141.4 116 65.5
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.3e-31 139.4 169 54.4
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 4.3e-31 139.0 81 88.9
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.6e-30 137.1 73 84.9
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 4.5e-28 129.0 92 71.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.4e-26 124.0 74 79.7
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.9e-24 115.9 111 61.3
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 4.5e-20 102.4 64 79.7
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 4.2e-18 95.9 124 46.0
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 5.3e-13 79.0 81 55.6
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.1e-10 71.2 56 66.1
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 4.2e-10 69.3 59 61.0
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 9.3e-10 68.2 62 62.9
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 1.3e-08 64.3 85 47.1
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.9e-07 60.5 36 72.2
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.6e-06 57.4 34 79.4
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 6.3e-06 55.5 52 57.7


User provided reference genes

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