Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 7.4e-59 230.3 116 100.0
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 4.8e-18 94.7 62 71.0
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 9.1e-17 90.5 102 51.0
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 1.2e-16 90.1 102 51.0
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 3.5e-16 88.6 95 51.6
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 5.9e-16 87.8 60 66.7
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 5.9e-16 87.8 110 51.8
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 5.9e-16 87.8 106 46.2
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 7.7e-16 87.4 60 75.0
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.0e-15 87.0 110 42.7
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 1.0e-15 87.0 107 53.3
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 2.2e-15 85.9 91 57.1
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 2.9e-15 85.5 101 50.5
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 2.9e-15 85.5 102 49.0
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 5.0e-15 84.7 87 55.2
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 5.0e-15 84.7 74 58.1
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 5.0e-15 84.7 98 50.0
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 6.5e-15 84.3 94 45.7
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 6.5e-15 84.3 61 68.9
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.1e-14 83.6 105 45.7
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 1.5e-14 83.2 105 46.7
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.9e-14 82.8 133 41.4
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 3.2e-14 82.0 58 63.8
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 4.2e-14 81.6 72 59.7
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 7.2e-14 80.9 65 56.9
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 7.2e-14 80.9 61 60.7
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 7.2e-14 80.9 119 42.0
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.2e-13 80.1 107 47.7
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 1.2e-13 80.1 83 54.2
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 1.6e-13 79.7 94 48.9
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 1.6e-13 79.7 67 61.2
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 1.6e-13 79.7 94 46.8
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 2.1e-13 79.3 90 47.8
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.6e-13 78.6 106 44.3
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 3.6e-13 78.6 59 64.4
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.6e-13 78.6 59 64.4
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.6e-13 78.6 59 64.4
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.7e-13 78.2 59 64.4
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 4.7e-13 78.2 113 45.1
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 4.7e-13 78.2 76 53.9
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 4.7e-13 78.2 105 46.7
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 6.1e-13 77.8 99 47.5
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 6.1e-13 77.8 99 47.5
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 6.1e-13 77.8 101 43.6
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 6.1e-13 77.8 87 55.2
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 6.1e-13 77.8 83 49.4
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 6.1e-13 77.8 90 50.0
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 6.1e-13 77.8 87 48.3
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 6.1e-13 77.8 87 48.3
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 8.0e-13 77.4 61 63.9
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 8.0e-13 77.4 98 45.9
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.0e-12 77.0 121 43.0
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 1.0e-12 77.0 72 55.6
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 1.4e-12 76.6 95 48.4
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 1.8e-12 76.3 62 62.9
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 1.8e-12 76.3 109 43.1
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.8e-12 76.3 61 63.9
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 1.8e-12 76.3 107 46.7
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.8e-12 76.3 60 63.3
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 2.3e-12 75.9 98 43.9
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 2.3e-12 75.9 105 43.8
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 2.3e-12 75.9 113 45.1
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 3.0e-12 75.5 102 44.1
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 4.0e-12 75.1 121 42.1
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 4.0e-12 75.1 101 42.6
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 5.2e-12 74.7 54 68.5
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 5.2e-12 74.7 103 44.7
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.8e-12 74.3 59 62.7
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 8.8e-12 73.9 94 47.9
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 8.8e-12 73.9 55 67.3
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-11 73.6 89 51.7
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.2e-11 73.6 65 63.1
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 2.6e-11 72.4 84 46.4
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 2.6e-11 72.4 53 69.8
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 5.7e-11 71.2 101 42.6
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 7.5e-11 70.9 49 67.3
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 7.5e-11 70.9 88 50.0
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.3e-10 70.1 61 60.7
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 1.7e-10 69.7 94 42.6
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 2.2e-10 69.3 49 71.4
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 3.7e-10 68.6 64 57.8
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 3.7e-10 68.6 52 67.3
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 3.7e-10 68.6 48 70.8
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 4.8e-10 68.2 108 40.7
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 4.8e-10 68.2 71 53.5
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 6.3e-10 67.8 71 52.1
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 8.3e-10 67.4 97 44.3
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 8.3e-10 67.4 90 48.9
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 1.1e-09 67.0 47 68.1
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 1.1e-09 67.0 47 68.1
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.4e-09 66.6 55 60.0
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.4e-09 66.6 76 47.4
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.8e-09 66.2 94 42.6
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 1.8e-09 66.2 107 40.2
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 2.4e-09 65.9 47 68.1
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 2.4e-09 65.9 47 68.1
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 2.4e-09 65.9 47 68.1
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 2.4e-09 65.9 47 68.1
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 2.4e-09 65.9 85 45.9
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 3.1e-09 65.5 46 65.2
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.1e-09 65.1 102 42.2
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 1.2e-08 63.5 56 58.9
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 3.5e-08 62.0 55 61.8
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 5.9e-08 61.2 48 62.5
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 1.0e-07 60.5 95 43.2
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 1.0e-07 60.5 51 60.8
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 1.7e-07 59.7 109 40.4
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 2.9e-07 58.9 45 60.0
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 3.8e-07 58.5 70 51.4
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 6.6e-07 57.8 55 58.2


User provided reference genes

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