Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 8.6e-101 370.5 218 100.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 4.2e-31 139.0 146 54.1
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.5e-31 138.7 150 50.7
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.7e-30 136.3 153 51.0
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.4e-29 134.0 151 53.0
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.3e-29 133.3 148 54.1
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 3.0e-29 132.9 141 52.5
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 3.9e-29 132.5 147 52.4
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 5.1e-29 132.1 123 59.3
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.1e-28 131.0 146 52.7
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 9.7e-28 127.9 107 63.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.7e-27 127.1 154 48.1
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.8e-27 126.3 147 51.0
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.8e-27 125.6 149 49.7
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 4.8e-27 125.6 89 71.9
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 6.3e-27 125.2 142 53.5
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.3e-27 125.2 143 50.3
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 8.2e-27 124.8 100 65.0
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 8.2e-27 124.8 100 65.0
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.1e-26 124.4 111 59.5
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.4e-26 124.0 81 79.0
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.8e-26 123.6 139 50.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.8e-26 123.6 143 49.7
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 1.8e-26 123.6 147 50.3
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.8e-26 123.6 161 48.4
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.1e-26 122.9 108 63.0
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.1e-26 122.5 123 56.1
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 5.3e-26 122.1 101 63.4
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 6.9e-26 121.7 111 57.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 6.9e-26 121.7 111 58.6
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 9.1e-26 121.3 118 57.6
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 9.1e-26 121.3 102 60.8
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 9.1e-26 121.3 79 78.5
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 9.1e-26 121.3 99 64.6
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.2e-25 120.9 109 60.6
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.2e-25 120.9 111 57.7
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.6e-25 119.8 78 76.9
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 3.4e-25 119.4 156 45.5
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 4.5e-25 119.0 127 52.8
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 4.5e-25 119.0 88 69.3
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 5.9e-25 118.6 105 61.9
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 7.7e-25 118.2 79 74.7
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.0e-24 117.9 94 67.0
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.0e-24 117.9 117 57.3
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.0e-24 117.9 138 50.0
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.0e-24 117.9 78 74.4
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.3e-24 117.5 105 61.9
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.7e-24 117.1 114 61.4
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 2.2e-24 116.7 88 65.9
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 2.2e-24 116.7 78 74.4
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 3.8e-24 115.9 140 50.0
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 5.0e-24 115.5 83 69.9
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 6.5e-24 115.2 88 64.8
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 8.5e-24 114.8 124 54.0
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.1e-23 114.4 121 54.5
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.4e-23 114.0 96 62.5
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.4e-23 114.0 78 71.8
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.4e-23 114.0 78 71.8
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.4e-23 114.0 80 70.0
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.9e-23 113.6 85 68.2
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 1.9e-23 113.6 121 53.7
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.9e-23 113.6 99 61.6
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 2.5e-23 113.2 78 71.8
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 3.2e-23 112.8 78 71.8
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.2e-23 112.8 83 68.7
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.2e-23 112.8 145 47.6
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 4.2e-23 112.5 85 67.1
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 4.2e-23 112.5 103 59.2
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 5.5e-23 112.1 107 57.0
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 5.5e-23 112.1 93 65.6
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 7.2e-23 111.7 142 50.0
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 7.2e-23 111.7 78 73.1
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 9.4e-23 111.3 81 69.1
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.4e-23 111.3 126 51.6
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 9.4e-23 111.3 78 70.5
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.2e-22 110.9 78 69.2
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.6e-22 110.5 78 69.2
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.6e-22 110.5 78 69.2
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.6e-22 110.5 78 69.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 2.1e-22 110.2 80 68.8
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 2.7e-22 109.8 106 57.5
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 3.6e-22 109.4 81 65.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 7.9e-22 108.2 82 70.7
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.0e-21 107.8 81 64.2
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.8e-21 107.1 78 67.9
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.8e-21 107.1 77 68.8
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.8e-21 107.1 99 57.6
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.8e-21 107.1 99 57.6
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.8e-21 107.1 81 66.7
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 2.3e-21 106.7 80 70.0
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 3.9e-21 105.9 76 68.4
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 6.7e-21 105.1 147 45.6
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 6.7e-21 105.1 60 86.7
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 2.0e-20 103.6 105 57.1
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 3.3e-20 102.8 77 67.5
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 4.4e-20 102.4 78 64.1
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 4.4e-20 102.4 87 65.5
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 4.4e-20 102.4 60 80.0
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 5.7e-20 102.1 132 46.2
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 5.7e-20 102.1 79 65.8
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 7.4e-20 101.7 63 81.0
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 7.4e-20 101.7 88 63.6
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 7.4e-20 101.7 79 68.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 9.7e-20 101.3 106 52.8
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.7e-19 100.5 81 67.9
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 2.2e-19 100.1 86 65.1
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.2e-19 100.1 79 67.1
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 2.2e-19 100.1 80 67.5
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 2.8e-19 99.8 118 49.2
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 3.7e-19 99.4 78 64.1
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 4.8e-19 99.0 78 62.8
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 8.2e-19 98.2 79 67.1
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.8e-18 97.1 78 62.8
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.4e-18 96.7 80 67.5
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 5.3e-18 95.5 79 63.3
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.2e-17 94.4 75 61.3
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 3.5e-17 92.8 98 51.0
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 7.7e-17 91.7 61 75.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.0e-16 91.3 142 43.7
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 5.0e-16 89.0 113 47.8
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 6.5e-16 88.6 82 59.8
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 2.3e-13 80.1 53 73.6
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.2e-12 77.8 53 71.7
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.2e-12 77.8 91 46.2
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 2.2e-11 73.6 87 51.7
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.3e-10 68.9 148 39.2
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 1.3e-08 64.3 93 45.2
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.3e-08 64.3 121 39.7
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.0e-08 62.4 114 39.5
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 8.5e-08 61.6 40 70.0
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 8.5e-08 61.6 40 70.0
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-07 60.8 121 38.0


User provided reference genes

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