Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006120 Simmondsia chinensis HOM05D006813 ORTHO05D008657 1.5e-236 822.4 404 100.0
EL10Ac2g03036 Beta vulgaris HOM05D006813 ORTHO05D008657 1.0e-163 580.5 407 69.8
AUR62034457 Chenopodium quinoa HOM05D006813 ORTHO05D008657 8.6e-163 577.4 405 70.4
Nn4g23302 Nelumbo nucifera HOM05D006813 ORTHO05D008657 6.1e-161 571.2 408 67.2
Manes.02G049900 Manihot esculenta HOM05D006813 ORTHO05D008657 1.0e-160 570.5 404 70.3
QL02p085115 Quercus lobata HOM05D006813 ORTHO05D008657 1.0e-160 570.5 416 68.0
CSS0034099 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 1.2e-159 567.0 416 68.3
Potri.004G120900 Populus trichocarpa HOM05D006813 ORTHO05D008657 1.3e-158 563.5 363 74.7
Sabra04G0067300 Salix brachista HOM05D006813 ORTHO05D008657 1.1e-157 560.5 404 68.3
Haze_14484 Corylus avellana HOM05D006813 ORTHO05D008657 5.4e-157 558.1 406 66.7
Cfa007604 Carpinus fangiana HOM05D006813 ORTHO05D008657 1.6e-156 556.6 409 66.5
Hund13179 Selenicereus undatus HOM05D006813 ORTHO05D008657 2.7e-156 555.8 427 64.4
Actinidia06110 Actinidia chinensis HOM05D006813 ORTHO05D008657 5.0e-155 551.6 405 65.7
TWI34G0739 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 4.3e-154 548.5 404 66.6
PGR004G2573 Punica granatum HOM05D006813 ORTHO05D008657 5.6e-154 548.1 410 65.4
CSS0013443 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 9.5e-154 547.4 404 66.8
TWI34G0213 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 1.6e-153 546.6 404 67.3
Ciclev10013781m.g Citrus clementina HOM05D006813 ORTHO05D008657 8.0e-153 544.3 400 67.5
RcHm_v2.0_Chr2g0166981 Rosa chinensis HOM05D006813 ORTHO05D008657 1.1e-152 543.9 404 65.3
DCAR_025399 Daucus carota HOM05D006813 ORTHO05D008657 1.4e-152 543.5 404 64.9
TAR371G1040 Trochodendron aralioides HOM05D006813 ORTHO05D008657 1.4e-152 543.5 409 64.3
GSVIVG01011472001 Vitis vinifera HOM05D006813 ORTHO05D008657 3.1e-152 542.3 415 66.5
Lalb_Chr02g0159111 Lupinus albus HOM05D006813 ORTHO05D008657 5.2e-152 541.6 343 74.1
Atru.chr8.345 Acer truncatum HOM05D006813 ORTHO05D008657 6.8e-152 541.2 404 67.3
Cc07_g03730 Coffea canephora HOM05D006813 ORTHO05D008657 8.9e-152 540.8 370 70.3
FvH4_6g47790 Fragaria vesca HOM05D006813 ORTHO05D008657 2.0e-151 539.7 359 71.3
FAN14G3538 Fragaria x ananassa HOM05D006813 ORTHO05D008657 2.0e-151 539.7 359 71.3
THA.LOC104805490 Tarenaya hassleriana HOM05D006813 ORTHO05D008657 4.4e-151 538.5 403 64.3
Medtr6g013150 Medicago truncatula HOM05D006813 ORTHO05D008657 9.8e-151 537.3 406 65.5
Nitab4.5_0000568g0240 Nicotiana tabacum HOM05D006813 ORTHO05D008657 1.3e-150 537.0 355 68.7
arahy.Tifrunner.gnm1.ann1.GGC6H3 Arachis hypogaea HOM05D006813 ORTHO05D008657 4.9e-150 535.0 345 73.3
MD09G1056700 Malus domestica HOM05D006813 ORTHO05D008657 1.9e-149 533.1 394 64.2
Nitab4.5_0001591g0010 Nicotiana tabacum HOM05D006813 ORTHO05D008657 1.9e-149 533.1 415 61.7
Thecc.04G088600 Theobroma cacao HOM05D006813 ORTHO05D008657 3.2e-149 532.3 404 65.1
CiPaw.03G021100 Carya illinoinensis HOM05D006813 ORTHO05D008657 4.1e-149 531.9 409 64.3
arahy.Tifrunner.gnm1.ann1.DSSH0H Arachis hypogaea HOM05D006813 ORTHO05D008657 5.4e-149 531.6 345 72.5
AUR62018125 Chenopodium quinoa HOM05D006813 ORTHO05D008657 5.4e-149 531.6 321 79.4
MBI07_g46965_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 5.4e-149 531.6 351 72.1
MELO3C022015.2 Cucumis melo HOM05D006813 ORTHO05D008657 7.0e-149 531.2 407 63.6
Actinidia01957 Actinidia chinensis HOM05D006813 ORTHO05D008657 2.0e-148 529.6 405 63.2
Glyma.19G026800 Glycine max HOM05D006813 ORTHO05D008657 2.7e-148 529.3 346 71.4
Glyma.13G060100 Glycine max HOM05D006813 ORTHO05D008657 3.5e-148 528.9 413 63.7
Lsat_1_v5_gn_4_170001 Lactuca sativa HOM05D006813 ORTHO05D008657 1.3e-147 526.9 368 68.5
VMungo0464G0720 Vigna mungo HOM05D006813 ORTHO05D008657 1.3e-147 526.9 380 66.6
CsaV3_5G038340 Cucumis sativus L. HOM05D006813 ORTHO05D008657 1.7e-147 526.6 407 62.4
Aqoxy3G03517 Aquilegia oxysepala HOM05D006813 ORTHO05D008657 3.0e-147 525.8 340 72.4
Sopen02g033040 Solanum pennellii HOM05D006813 ORTHO05D008657 3.9e-147 525.4 358 68.2
Gorai.012G051400 Gossypium raimondii HOM05D006813 ORTHO05D008657 8.6e-147 524.2 404 65.1
Solyc02g088350.4 Solanum lycopersicum HOM05D006813 ORTHO05D008657 1.9e-146 523.1 358 67.9
Gohir.D04G046200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 2.5e-146 522.7 404 64.9
HanXRQChr09g0264041 Helianthus annuus HOM05D006813 ORTHO05D008657 2.5e-146 522.7 393 65.9
AL5G19100 Arabidopsis lyrata HOM05D006813 ORTHO05D008657 3.3e-146 522.3 407 62.7
Gohir.A05G369200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 3.3e-146 522.3 376 67.8
ECA232G0359 Erigeron canadensis HOM05D006813 ORTHO05D008657 5.6e-146 521.5 347 69.5
CAN.G206.184 Capsicum annuum HOM05D006813 ORTHO05D008657 9.5e-146 520.8 413 61.3
Dinv33795 Davidia involucrata HOM05D006813 ORTHO05D008657 9.5e-146 520.8 309 78.6
Lj2g0012161 Lotus japonicus HOM05D006813 ORTHO05D008657 1.2e-145 520.4 369 68.3
Phvul.004G032400 Phaseolus vulgaris HOM05D006813 ORTHO05D008657 1.2e-145 520.4 404 63.6
Psat1g069960 Pisum sativum HOM05D006813 ORTHO05D008657 1.2e-145 520.4 404 63.9
AT3G29185 Arabidopsis thaliana HOM05D006813 ORTHO05D008657 2.1e-145 519.6 356 68.0
PGSC0003DMG400001435 Solanum tuberosum HOM05D006813 ORTHO05D008657 3.6e-145 518.8 341 69.2
ClCG11G004590 Citrullus lanatus HOM05D006813 ORTHO05D008657 4.7e-145 518.5 404 63.6
CANSAT64G1527 Cannabis sativa HOM05D006813 ORTHO05D008657 2.3e-144 516.2 419 63.0
Thhalv10004355m.g Eutrema salsugineum HOM05D006813 ORTHO05D008657 3.1e-144 515.8 409 62.1
MD17G1054200 Malus domestica HOM05D006813 ORTHO05D008657 4.0e-144 515.4 390 63.8
MSTRG.3341 Avicennia marina HOM05D006813 ORTHO05D008657 5.2e-144 515.0 377 66.0
CDE04G0700 Ceratophyllum demersum HOM05D006813 ORTHO05D008657 2.0e-143 513.1 363 65.8
Sp2g17800 Schrenkiella parvula HOM05D006813 ORTHO05D008657 2.6e-143 512.7 408 62.5
SalBow1G5727 Salvia bowleyana HOM05D006813 ORTHO05D008657 3.4e-143 512.3 355 68.2
C07p38090 Brassica napus HOM05D006813 ORTHO05D008657 5.8e-143 511.5 356 67.1
BolC7t44331H Brassica oleracea HOM05D006813 ORTHO05D008657 5.8e-143 511.5 356 67.1
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 1.7e-142 510.0 418 60.8
Duzib264G0095 Durio zibethinus HOM05D006813 ORTHO05D008657 2.9e-142 509.2 404 63.1
BcaC06g30887 Brassica carinata HOM05D006813 ORTHO05D008657 1.4e-141 506.9 389 63.0
A06p40070 Brassica napus HOM05D006813 ORTHO05D008657 1.4e-141 506.9 356 67.4
BraA06t26922Z Brassica rapa HOM05D006813 ORTHO05D008657 1.4e-141 506.9 356 67.4
vmacro05678 Vaccinium macrocarpon HOM05D006813 ORTHO05D008657 2.4e-141 506.1 415 62.9
Rhsim10G0035200 Rhododendron simsii HOM05D006813 ORTHO05D008657 4.1e-141 505.4 423 62.4
Peaxi162Scf00166g00933 Petunia axillaris HOM05D006813 ORTHO05D008657 1.6e-140 503.4 318 72.3
PSO063G1088 Papaver somniferum HOM05D006813 ORTHO05D008657 3.5e-140 502.3 344 68.3
BcaC06g33677 Brassica carinata HOM05D006813 ORTHO05D008657 7.8e-140 501.1 358 66.2
Lju41A8T104 Lonicera japonica HOM05D006813 ORTHO05D008657 2.3e-139 499.6 432 59.3
COL.COLO4_12242 Corchorus olitorius HOM05D006813 ORTHO05D008657 6.6e-139 498.0 317 74.8
ATR0730G176 Amborella trichopoda HOM05D006813 ORTHO05D008657 3.3e-138 495.7 342 68.7
PSO063G3583 Papaver somniferum HOM05D006813 ORTHO05D008657 2.1e-137 493.0 344 67.2
SGA_v2.0_scaffold154G37082 Striga asiatica HOM05D006813 ORTHO05D008657 4.7e-137 491.9 394 61.2
Migut.K01297 Erythranthe guttata HOM05D006813 ORTHO05D008657 1.2e-135 487.3 367 63.5
HPP92_015887 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.3e-134 483.8 356 64.0
Os03g0758900 Oryza sativa ssp. japonica HOM05D006813 ORTHO05D008657 4.1e-133 478.8 379 61.5
Zm00001eb057930 Zea mays HOM05D006813 ORTHO05D008657 4.3e-130 468.8 345 67.2
CARHR152350 Cardamine hirsuta HOM05D006813 ORTHO05D008657 2.9e-126 456.1 408 57.8
TPR.G26959 Trifolium pratense HOM05D006813 ORTHO05D008657 2.5e-122 443.0 296 71.3
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 7.3e-122 441.4 408 54.9
Oeu023718.1 Olea europaea HOM05D006813 ORTHO05D008657 1.4e-120 437.2 336 64.3
Zm00001eb214510 Zea mays HOM05D006813 ORTHO05D008657 7.6e-119 431.4 361 60.4
Dinv11496 Davidia involucrata HOM05D006813 ORTHO05D008657 2.1e-113 413.3 287 68.6
Prupe.3G262000 Prunus persica HOM05D006813 ORTHO05D008657 1.2e-111 407.5 248 74.2
Carub.0005s0792 Capsella rubella HOM05D006813 ORTHO05D008657 1.6e-108 397.1 256 71.1
Sed0010301 Sechium edule HOM05D006813 ORTHO05D008657 3.7e-105 386.0 248 72.2
FAN05G4860 Fragaria x ananassa HOM05D006813 ORTHO05D008657 1.1e-101 374.4 306 61.8
SEGI_06128 Sequoiadendron giganteum HOM05D006813 ORTHO05D008657 1.1e-101 374.4 347 52.2
MBI07_g25549_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 6.9e-96 355.1 273 65.2
SalBow1G0723 Salvia bowleyana HOM05D006813 ORTHO05D008657 1.9e-93 347.1 260 64.6
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 7.9e-92 341.7 375 48.5
Mapoly0015s0143 Marchantia polymorpha HOM05D006813 ORTHO05D008657 1.9e-90 337.0 367 46.6
Haze_14493 Corylus avellana HOM05D006813 ORTHO05D008657 4.3e-90 335.9 372 48.1
Pp3c27_2000 Physcomitrium patens HOM05D006813 ORTHO05D008657 4.5e-87 325.9 361 43.8
SMO347G0068 Selaginella moellendorffii HOM05D006813 ORTHO05D008657 1.4e-72 277.7 342 40.9
HPP92_015898 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.2e-60 238.0 185 60.5
BcaC06g30885 Brassica carinata HOM05D006813 ORTHO05D008657 3.6e-44 183.3 125 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3657 Anthoceros agrestis HOM05D006813 ORTHO05D008657 2.4e-40 170.6 189 46.6
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.6e-38 162.2 159 50.3
SalBow1G7870 Salvia bowleyana HOM05D006813 ORTHO05D008657 3.6e-36 156.8 91 75.8
TPR.G26199 Trifolium pratense HOM05D006813 ORTHO05D001332 3.6e-36 156.8 88 79.5
MD09G1057100 Malus domestica HOM05D006813 ORTHO05D008657 4.7e-36 156.4 158 50.0
HPP92_015897 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.0e-30 138.7 107 59.8
HanXRQChr08g0223741 Helianthus annuus HOM05D006813 ORTHO05D008657 1.8e-19 101.3 87 57.5
ECA247G1425 Erigeron canadensis HOM05D006813 ORTHO05D008657 4.9e-17 93.2 53 71.7
TAR633G2432 Trochodendron aralioides HOM05D006813 ORTHO05D414814 5.1e-14 83.2 93 46.2


User provided reference genes

Program Settings