Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.2e-228 796.2 405 100.0
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 6.4e-158 561.2 412 71.8
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 3.9e-155 552.0 414 70.5
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.5e-154 550.1 412 70.4
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 3.1e-152 542.3 374 75.7
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 4.9e-150 535.0 372 73.1
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 1.6e-148 530.0 388 71.6
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 1.9e-146 523.1 369 73.4
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 3.3e-146 522.3 369 71.8
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 4.3e-146 521.9 361 73.4
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 7.3e-146 521.2 359 74.7
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 1.6e-145 520.0 384 69.5
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 1.1e-144 517.3 385 69.1
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.0e-144 515.4 355 73.5
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 1.2e-143 513.8 363 71.9
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 1.2e-143 513.8 361 71.5
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.4e-143 512.3 361 72.6
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 3.4e-143 512.3 355 73.0
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 1.7e-142 510.0 371 71.7
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 2.9e-142 509.2 410 66.3
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 3.8e-142 508.8 387 69.5
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 8.4e-142 507.7 352 73.6
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.4e-141 506.9 385 66.8
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 1.4e-141 506.9 352 73.6
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 1.4e-141 506.9 389 67.9
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 3.2e-141 505.8 361 71.5
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 5.4e-141 505.0 417 64.5
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 5.4e-141 505.0 388 66.2
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.2e-140 503.8 361 72.3
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 2.1e-140 503.1 364 70.9
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 2.7e-140 502.7 365 70.4
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 3.5e-140 502.3 364 69.8
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.0e-139 500.7 416 64.9
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 8.7e-139 497.7 358 69.3
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 2.5e-138 496.1 361 69.3
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 3.3e-138 495.7 384 66.7
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 4.3e-138 495.4 379 67.0
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 4.3e-138 495.4 355 69.9
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 7.3e-138 494.6 360 69.2
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 1.2e-137 493.8 371 69.0
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 1.2e-137 493.8 357 70.6
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 2.1e-137 493.0 451 59.6
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 2.8e-137 492.7 380 66.6
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 4.7e-137 491.9 355 69.3
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 6.2e-137 491.5 378 66.4
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 1.1e-136 490.7 345 74.2
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 1.8e-136 490.0 357 69.2
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 2.4e-136 489.6 354 70.9
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 2.4e-136 489.6 371 67.9
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 4.0e-136 488.8 376 66.8
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 6.9e-136 488.0 357 70.3
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 2.0e-135 486.5 425 60.7
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 5.8e-135 485.0 354 67.8
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 5.8e-135 485.0 355 69.9
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 1.3e-134 483.8 354 67.5
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 1.3e-134 483.8 354 66.7
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 1.3e-134 483.8 409 60.6
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 2.2e-134 483.0 354 66.7
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 2.2e-134 483.0 379 64.6
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 2.9e-134 482.6 381 62.7
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 2.9e-134 482.6 381 62.7
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 2.9e-134 482.6 421 60.1
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 6.4e-134 481.5 354 70.3
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 8.4e-134 481.1 354 66.4
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 5.4e-133 478.4 368 68.2
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 7.1e-133 478.0 355 65.9
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.2e-132 477.2 342 71.9
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 2.1e-132 476.5 417 62.1
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 4.6e-132 475.3 356 66.3
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.3e-131 473.8 343 70.0
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.7e-131 473.4 363 66.7
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 5.1e-131 471.9 360 65.6
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 5.1e-131 471.9 407 63.6
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 5.6e-130 468.4 360 65.3
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 9.6e-130 467.6 359 64.3
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 2.1e-129 466.5 356 67.1
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 2.8e-129 466.1 345 67.8
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 3.6e-129 465.7 355 67.6
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 4.8e-129 465.3 361 68.1
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 9.0e-128 461.1 349 69.1
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 9.0e-128 461.1 360 66.9
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 7.6e-127 458.0 361 64.8
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 8.4e-126 454.5 322 69.9
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.4e-125 453.8 316 71.5
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 1.0e-123 447.6 335 68.7
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 3.0e-123 446.0 353 66.3
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 9.0e-120 434.5 366 61.7
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.0e-119 433.3 367 63.2
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 8.7e-115 417.9 313 66.8
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.5e-114 417.2 316 67.7
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 3.4e-111 406.0 271 72.7
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 5.8e-111 405.2 317 65.9
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 2.2e-110 403.3 321 63.6
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 8.7e-107 391.3 359 56.5
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.7e-102 377.1 354 54.8
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 6.5e-102 375.2 359 53.2
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.3e-97 360.9 354 53.4
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 3.2e-85 319.7 267 59.9
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 3.3e-82 309.7 420 47.6
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 9.7e-82 308.1 252 58.3
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.7e-81 306.2 342 48.8
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 5.9e-79 298.9 257 63.0
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 1.5e-77 294.3 187 79.7
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 8.5e-70 268.5 364 43.7
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 5.5e-69 265.8 183 70.5
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.6e-68 264.2 409 39.4
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.6e-68 264.2 409 39.4
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 3.0e-67 260.0 185 72.4
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.8e-65 252.7 410 37.8
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 1.8e-59 234.2 341 44.0
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 1.3e-54 218.0 208 52.9
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 7.3e-53 212.2 516 29.5
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 6.1e-52 209.1 362 39.5
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 3.4e-42 176.8 193 51.8
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 6.4e-41 172.6 142 59.9
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 3.1e-35 153.7 129 59.7
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 4.9e-17 93.2 71 67.6
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 6.4e-17 92.8 73 63.0
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.4e-16 89.7 168 35.1
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 7.1e-16 89.4 65 70.8
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.6e-15 88.2 156 34.0
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 3.5e-15 87.0 61 70.5
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.3e-14 85.1 171 34.5
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.0e-14 84.0 170 32.9
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 3.0e-14 84.0 61 60.7
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 5.3e-11 73.2 53 71.7


User provided reference genes

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