Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1580.5 832 100.0
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1284.2 841 80.0
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1280.0 840 78.7
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1271.9 837 79.2
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1270.8 837 79.0
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1267.7 841 78.5
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1266.5 837 79.6
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1266.5 838 78.2
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1265.0 838 78.6
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1264.2 839 78.5
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1260.4 837 79.2
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1259.2 835 78.8
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1258.0 839 77.8
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1258.0 836 78.5
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1256.5 840 77.9
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1255.4 839 77.5
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1255.0 843 79.7
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1255.0 835 78.4
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1253.4 838 77.3
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1253.0 842 77.6
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1250.7 835 77.8
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1246.9 837 77.2
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1241.5 839 77.9
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1237.6 835 77.7
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1237.2 835 77.6
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1235.7 840 76.7
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1234.2 835 77.2
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1231.9 835 77.1
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1231.5 837 77.4
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1231.1 839 76.9
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1229.9 835 76.9
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1229.5 835 76.8
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1227.6 836 77.3
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1227.6 835 76.8
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1226.8 834 77.1
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1226.1 835 76.4
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1225.3 840 75.8
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1223.8 806 80.6
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1223.4 839 76.9
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1223.4 835 76.6
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1222.2 835 76.6
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1221.5 835 76.4
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1221.1 837 75.5
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1218.8 836 76.1
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1217.6 836 76.8
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1217.2 839 76.8
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1217.2 845 75.3
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1213.4 836 76.4
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1212.6 831 76.7
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1210.3 855 74.7
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1207.2 836 76.0
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1205.7 839 75.1
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1201.0 837 74.6
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1200.3 837 74.6
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1196.4 837 74.4
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1196.4 850 74.7
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1195.3 839 74.1
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1194.5 932 69.5
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1192.6 830 76.3
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1191.0 838 73.9
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1190.6 837 74.1
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1187.9 837 74.0
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1187.6 836 74.0
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1187.2 850 74.4
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1186.8 835 73.4
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1186.8 857 75.0
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1186.0 838 73.6
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1185.2 838 74.5
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1181.8 838 73.3
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1180.2 837 73.7
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1178.7 834 74.6
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1176.0 837 74.6
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1172.9 838 73.3
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1171.8 839 75.4
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1171.4 839 73.5
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1171.4 838 73.7
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1168.7 838 72.9
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1167.9 840 72.6
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1167.1 856 72.0
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1166.8 839 73.2
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1166.8 856 71.8
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1166.0 839 72.6
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1164.4 839 72.8
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1164.4 838 72.7
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1164.1 839 72.8
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1162.9 836 73.3
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1161.7 838 72.8
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1154.8 835 72.7
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1146.0 836 72.1
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1141.7 840 70.6
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1116.3 857 70.7
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1114.8 996 62.4
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1110.5 833 71.7
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1109.0 746 77.1
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1091.6 837 69.1
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 8.1e-309 1063.5 724 76.8
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 2.1e-293 1012.3 833 67.2
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 6.0e-288 994.2 680 75.9
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 3.6e-280 968.4 715 69.7
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 4.8e-253 878.2 852 54.9
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 3.0e-247 859.0 857 54.3
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 9.2e-228 794.3 832 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.6e-226 788.1 748 57.0
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 3.6e-224 782.3 522 77.0
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 6.2e-216 755.0 544 72.4
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.7e-213 745.7 544 70.8
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.2e-211 740.7 605 65.0
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.3e-210 736.5 617 65.2
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.3e-204 714.5 507 73.4
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 6.4e-189 665.2 896 43.8
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.4e-185 651.7 557 63.4
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 6.9e-183 645.2 426 79.8
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 1.5e-166 590.9 445 73.3
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.1e-163 580.5 436 69.7
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 5.9e-150 535.8 343 79.9
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 1.8e-143 514.2 399 67.7
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.8e-136 490.3 382 69.1
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.6e-118 431.4 371 63.9
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 3.6e-115 420.2 337 64.1
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 2.9e-112 410.6 293 74.4
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 8.6e-101 372.5 426 53.1
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.9e-100 371.3 265 74.0
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 3.4e-97 360.5 234 76.9
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 9.9e-97 359.0 234 76.5
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 5.4e-95 353.2 857 30.8
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.8e-75 287.7 210 69.0
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 4.0e-74 283.9 856 27.6
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.3e-72 278.9 232 65.5
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.5e-65 255.4 265 55.5
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 7.4e-60 236.5 181 71.3
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 9.6e-60 236.1 211 58.8
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 2.3e-53 214.9 209 60.8
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 6.7e-53 213.4 288 45.8
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.1e-44 186.0 130 68.5
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 2.5e-44 184.9 121 79.3
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 3.3e-44 184.5 121 73.6
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 6.9e-42 176.8 95 100.0
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 9.1e-42 176.4 105 88.6
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 2.2e-35 155.2 104 74.0
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 3.7e-35 154.5 104 74.0
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 4.8e-35 154.1 97 79.4
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 3.1e-34 151.4 95 74.7
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 4.1e-34 151.0 95 76.8
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 1.2e-30 139.4 230 39.1
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 4.7e-30 137.5 139 54.0
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.7e-30 137.5 95 73.7
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.5e-28 132.5 95 74.7
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 5.9e-25 120.6 87 78.2
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 3.2e-23 114.8 216 37.0
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 9.4e-23 113.2 234 34.6
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 2.1e-22 112.1 279 33.7
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 3.6e-22 111.3 142 47.2
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.4e-21 109.4 82 68.3
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.6e-17 95.9 72 73.6
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.0e-16 93.2 99 43.4
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 1.3e-16 92.8 78 69.2
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.3e-16 92.8 92 58.7
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 1.3e-11 76.3 56 69.6
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 7.0e-10 70.5 149 34.9
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 7.0e-10 70.5 87 43.7
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 8.6e-08 63.5 55 54.5


User provided reference genes

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