Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 3.6e-77 291.6 153 100.0
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 7.5e-43 177.6 95 100.0
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 1.3e-39 166.8 95 90.5
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 3.6e-37 158.7 95 85.3
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 3.0e-36 155.6 95 82.1
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 4.0e-36 155.2 95 83.2
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 4.0e-36 155.2 95 83.2
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 5.2e-36 154.8 95 83.2
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 5.2e-36 154.8 99 77.8
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 6.8e-36 154.5 95 81.1
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 1.2e-35 153.7 95 81.1
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 1.2e-35 153.7 95 81.1
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 2.0e-35 152.9 95 80.0
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 4.4e-35 151.8 95 80.0
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 5.7e-35 151.4 95 81.1
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 5.7e-35 151.4 95 81.1
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 5.7e-35 151.4 95 81.1
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 5.7e-35 151.4 95 80.0
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 5.7e-35 151.4 95 80.0
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 7.5e-35 151.0 95 80.0
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 7.5e-35 151.0 95 80.0
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 7.5e-35 151.0 95 80.0
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 7.5e-35 151.0 95 80.0
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 7.5e-35 151.0 95 81.1
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 7.5e-35 151.0 95 80.0
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 7.5e-35 151.0 95 78.9
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 7.5e-35 151.0 95 80.0
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 9.8e-35 150.6 95 80.0
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 9.8e-35 150.6 95 80.0
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 9.8e-35 150.6 95 81.1
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 1.3e-34 150.2 95 78.9
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 1.3e-34 150.2 95 78.9
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 1.3e-34 150.2 95 80.0
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 1.7e-34 149.8 95 78.9
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 1.7e-34 149.8 94 80.9
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 1.7e-34 149.8 95 80.0
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 1.7e-34 149.8 95 82.1
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 2.2e-34 149.4 95 81.1
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 2.2e-34 149.4 95 78.9
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 2.2e-34 149.4 95 78.9
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 2.2e-34 149.4 95 78.9
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 2.2e-34 149.4 95 78.9
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 2.2e-34 149.4 95 78.9
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 2.2e-34 149.4 95 78.9
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 2.2e-34 149.4 95 81.1
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 2.9e-34 149.1 95 78.9
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 2.9e-34 149.1 95 78.9
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 2.9e-34 149.1 95 80.0
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 2.9e-34 149.1 95 80.0
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 3.7e-34 148.7 94 79.8
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 4.9e-34 148.3 95 77.9
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 4.9e-34 148.3 95 78.9
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 8.3e-34 147.5 95 78.9
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 8.3e-34 147.5 94 78.7
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 8.3e-34 147.5 95 77.9
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 1.1e-33 147.1 95 75.8
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 1.1e-33 147.1 95 80.0
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 1.1e-33 147.1 95 78.9
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 1.1e-33 147.1 95 77.9
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 1.1e-33 147.1 95 77.9
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 1.1e-33 147.1 94 78.7
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 1.4e-33 146.7 95 76.8
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 1.8e-33 146.4 95 78.9
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 1.8e-33 146.4 95 76.8
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 2.4e-33 146.0 95 78.9
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 2.4e-33 146.0 95 76.8
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 2.4e-33 146.0 95 76.8
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 3.2e-33 145.6 94 77.7
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 3.2e-33 145.6 95 75.8
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 3.2e-33 145.6 95 77.9
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 4.1e-33 145.2 95 75.8
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 4.1e-33 145.2 95 76.8
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 4.1e-33 145.2 94 78.7
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 5.4e-33 144.8 95 76.8
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 9.2e-33 144.1 95 74.7
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.2e-33 144.1 95 74.7
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.2e-33 144.1 95 74.7
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.2e-33 144.1 95 74.7
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.2e-33 144.1 95 74.7
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 1.2e-32 143.7 95 75.8
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 1.2e-32 143.7 95 76.8
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 2.7e-32 142.5 95 74.7
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.6e-32 141.7 95 73.7
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 4.6e-32 141.7 95 73.7
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 7.8e-32 141.0 96 77.1
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 1.0e-31 140.6 95 76.8
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 1.3e-31 140.2 95 70.5
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 1.7e-31 139.8 94 75.5
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 2.3e-31 139.4 95 75.8
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.3e-31 139.4 97 72.2
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 3.0e-31 139.0 95 74.7
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 8.6e-31 137.5 95 70.5
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 1.5e-30 136.7 95 74.7
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 3.3e-30 135.6 95 72.6
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 3.3e-30 135.6 95 75.8
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.3e-30 135.6 95 72.6
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 4.3e-30 135.2 95 72.6
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 4.3e-30 135.2 95 72.6
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 4.3e-30 135.2 95 71.6
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.6e-29 133.3 95 74.7
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 1.0e-28 130.6 79 81.0
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.4e-28 130.2 95 67.4
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 8.9e-28 127.5 95 70.5
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 4.4e-27 125.2 95 64.2
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 4.4e-27 125.2 108 67.6
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 7.5e-27 124.4 108 66.7
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 8.3e-26 120.9 102 59.8
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.6e-24 116.7 95 64.2
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 2.3e-23 112.8 96 64.6
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 2.3e-23 112.8 93 60.2
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 7.3e-22 107.8 95 51.6
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.3e-20 102.8 95 56.8
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.1e-17 94.0 70 68.6
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 1.0e-15 87.4 93 49.5
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 1.4e-12 77.0 74 55.4
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 8.4e-10 67.8 89 38.2
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.7e-07 60.1 42 73.8
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 6.6e-07 58.2 42 73.8


User provided reference genes

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