Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.7e-108 394.8 191 100.0
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 4.3e-80 301.6 184 75.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 5.2e-78 294.7 186 72.6
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 8.9e-78 293.9 186 72.6
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.4e-77 292.0 186 71.5
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 7.6e-77 290.8 192 71.4
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 9.9e-77 290.4 180 72.8
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 9.9e-77 290.4 180 75.6
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.7e-76 289.7 186 73.1
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 3.8e-76 288.5 180 75.0
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.8e-76 288.5 149 91.3
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.4e-75 286.6 180 71.7
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.4e-75 286.6 180 73.3
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.4e-75 286.6 193 71.0
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 2.4e-75 285.8 193 74.6
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.4e-75 285.8 187 70.6
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 9.3e-75 283.9 193 72.0
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 9.3e-75 283.9 192 70.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 9.3e-75 283.9 180 72.8
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 2.1e-74 282.7 171 77.2
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 2.7e-74 282.3 181 71.8
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.7e-74 282.3 180 72.8
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 4.6e-74 281.6 180 72.8
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 6.0e-74 281.2 189 69.8
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 7.8e-74 280.8 180 72.2
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 7.8e-74 280.8 192 70.3
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 7.8e-74 280.8 180 73.9
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 7.8e-74 280.8 192 70.8
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.0e-73 280.4 180 73.9
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.3e-73 280.0 179 73.2
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.3e-73 280.0 184 72.8
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.3e-73 279.3 195 70.8
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 2.3e-73 279.3 180 70.6
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.0e-73 278.9 181 71.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 3.9e-73 278.5 189 71.4
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 5.1e-73 278.1 183 71.0
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 6.6e-73 277.7 184 71.2
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.6e-73 277.7 188 70.7
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.6e-73 277.7 184 71.2
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 6.6e-73 277.7 181 70.7
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 8.7e-73 277.3 191 68.1
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 8.7e-73 277.3 180 71.1
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.1e-72 276.9 190 67.9
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.9e-72 276.2 184 70.7
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.5e-72 275.8 180 72.2
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.3e-72 275.4 201 67.2
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.3e-72 275.4 181 72.4
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 5.6e-72 274.6 180 71.7
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 7.3e-72 274.2 183 69.4
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 9.6e-72 273.9 180 70.6
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.3e-71 273.5 198 65.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.8e-71 272.3 187 69.0
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.8e-71 272.3 189 68.8
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 4.8e-71 271.6 186 68.3
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 6.2e-71 271.2 191 69.1
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.1e-70 268.9 181 71.8
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 3.1e-70 268.9 180 70.0
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 4.0e-70 268.5 180 70.0
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 5.3e-70 268.1 184 68.5
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 9.0e-70 267.3 166 73.5
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.2e-69 266.9 194 65.5
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 3.4e-69 265.4 183 68.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 3.4e-69 265.4 183 66.7
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 3.8e-68 261.9 180 71.1
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 6.4e-68 261.2 194 66.5
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 3.2e-67 258.8 180 67.2
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 3.2e-67 258.8 180 67.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 4.2e-67 258.5 180 65.6
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 9.3e-67 257.3 182 67.6
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.1e-66 256.1 180 65.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 2.7e-66 255.8 191 63.9
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 3.5e-66 255.4 180 65.0
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 6.0e-66 254.6 181 66.3
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 6.0e-66 254.6 177 68.4
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 6.0e-66 254.6 201 64.2
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.9e-66 254.2 185 65.9
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.0e-65 253.8 178 67.4
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.8e-65 253.1 183 66.7
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.9e-65 251.9 179 64.2
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.9e-65 251.9 179 64.2
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 5.1e-65 251.5 201 58.7
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 6.7e-65 251.1 173 71.1
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 6.7e-65 251.1 259 52.1
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.5e-64 249.2 180 66.1
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.5e-64 249.2 176 68.2
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.5e-64 249.2 159 72.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.3e-64 248.4 181 64.6
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 3.6e-63 245.4 178 63.5
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 4.8e-63 245.0 171 66.7
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 6.2e-63 244.6 179 61.5
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.1e-62 243.8 181 63.5
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.4e-62 243.4 181 63.5
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.4e-62 243.4 165 69.1
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.4e-62 243.4 176 65.3
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.3e-62 241.5 181 63.0
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.8e-60 235.3 190 61.6
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.1e-59 233.8 181 60.2
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.9e-59 233.0 176 60.8
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.9e-59 233.0 179 57.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 3.2e-59 232.3 183 61.2
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.6e-58 229.9 162 69.1
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.6e-58 229.9 183 59.0
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.1e-58 229.6 181 59.7
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 4.6e-58 228.4 191 58.6
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.0e-57 227.3 178 58.4
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.3e-55 220.3 173 63.6
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 2.8e-55 219.2 137 75.9
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.4e-54 216.1 188 54.8
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 5.3e-54 214.9 163 63.8
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 9.0e-54 214.2 159 59.7
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.1e-51 207.2 133 73.7
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.6e-50 203.4 133 71.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 5.1e-49 198.4 192 52.6
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.7e-49 198.0 169 56.8
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.7e-49 197.6 166 57.8
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.5e-48 196.8 133 63.9
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 9.6e-48 194.1 164 61.0
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-47 193.7 168 57.1
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-44 183.7 152 59.2
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-44 183.3 163 55.2
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.2e-42 177.2 112 71.4
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.3e-40 168.7 176 50.0
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 8.2e-39 164.5 186 45.7
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 4.1e-38 162.2 180 46.7
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 3.4e-37 159.1 182 45.1
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.5e-37 158.7 168 49.4
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.0e-36 157.5 125 60.8
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.2e-36 156.4 120 61.7
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.5e-36 154.5 107 64.5
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 7.2e-35 151.4 180 46.1
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 2.8e-31 139.4 89 67.4
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.4e-29 132.5 82 74.4
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 1.4e-27 127.1 191 38.2
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.1e-22 107.8 91 54.9
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.2e-20 103.2 117 47.0
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 2.1e-10 70.1 108 39.8
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 6.1e-10 68.6 45 71.1
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.0e-09 67.8 53 58.5
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.8e-09 67.0 55 65.5
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 4.0e-09 65.9 53 60.4
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 3.4e-08 62.8 52 59.6
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 7.5e-08 61.6 46 60.9


User provided reference genes

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