Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.1e-166 590.1 350 100.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 3.0e-95 352.8 296 64.9
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.6e-93 345.9 302 65.9
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.9e-92 341.7 299 64.5
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.2e-91 340.9 301 63.8
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 4.9e-90 335.5 336 58.6
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 4.9e-90 335.5 336 58.6
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 7.1e-89 331.6 314 62.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 2.1e-88 330.1 295 65.1
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 7.8e-88 328.2 293 63.1
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.3e-87 326.6 291 62.5
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.3e-85 320.9 302 62.9
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.6e-85 320.5 302 62.3
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.1e-85 320.1 319 58.3
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.2e-83 314.3 299 61.2
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.5e-83 313.9 296 61.8
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.1e-81 307.8 321 57.3
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.4e-81 306.6 318 56.9
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 4.2e-81 305.8 303 58.4
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.2e-80 304.3 308 56.5
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 3.5e-80 302.8 302 59.3
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 4.6e-80 302.4 304 58.2
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 4.6e-80 302.4 306 56.2
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.9e-79 299.3 305 58.7
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 8.7e-79 298.1 302 56.3
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 8.7e-79 298.1 294 57.8
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 4.3e-78 295.8 304 57.9
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.8e-77 292.4 303 58.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 4.8e-77 292.4 294 60.2
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.4e-76 290.8 301 54.8
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.8e-76 290.4 307 57.3
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.8e-76 290.4 301 54.5
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.4e-76 290.0 274 60.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.3e-76 288.9 305 57.4
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 2.0e-75 287.0 307 56.7
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.0e-75 287.0 303 55.8
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.6e-75 286.6 307 57.0
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 4.5e-75 285.8 311 55.9
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.6e-75 285.0 305 56.7
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 9.9e-75 284.6 295 56.3
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 9.9e-75 284.6 234 65.0
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 9.9e-75 284.6 303 56.4
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.2e-74 283.5 301 53.5
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.9e-74 283.1 303 56.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.8e-74 282.7 305 56.7
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 3.8e-74 282.7 305 56.1
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.8e-74 282.7 305 56.1
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.4e-73 280.8 308 56.2
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.2e-73 279.3 304 53.6
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.2e-73 279.3 305 56.1
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.5e-73 278.9 305 56.1
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.6e-72 277.3 304 55.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.6e-72 277.3 307 55.7
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.6e-72 277.3 297 55.2
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.1e-72 276.9 312 53.5
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 6.0e-72 275.4 309 51.8
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.3e-71 273.5 307 55.7
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.0e-71 273.1 304 56.6
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.1e-71 272.3 304 55.6
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 8.7e-71 271.6 307 55.0
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.5e-70 270.0 296 55.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.3e-70 269.6 311 53.4
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 3.3e-70 269.6 311 53.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 3.3e-70 269.6 306 55.6
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 4.3e-70 269.2 303 54.8
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 5.6e-70 268.9 296 55.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 5.6e-70 268.9 301 53.8
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 9.6e-70 268.1 304 54.3
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.6e-69 267.3 301 52.2
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.1e-68 264.6 297 52.5
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.1e-68 264.6 307 52.4
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.8e-68 263.8 307 53.1
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.4e-68 263.5 265 60.0
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 6.9e-68 261.9 307 53.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.2e-67 261.2 306 51.6
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.2e-67 261.2 303 52.5
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.5e-67 260.8 307 53.7
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.6e-67 260.0 317 51.4
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 4.5e-67 259.2 300 54.3
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.3e-66 257.7 309 52.8
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 3.8e-66 256.1 306 52.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 4.9e-66 255.8 317 51.7
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.1e-65 254.6 307 52.1
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.4e-65 254.2 299 51.8
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.4e-65 254.2 306 52.0
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.5e-65 253.4 262 57.6
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.5e-65 253.4 302 52.3
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 3.2e-65 253.1 284 52.5
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.2e-64 251.1 309 49.8
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.5e-64 249.6 291 54.3
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.0e-63 248.1 293 52.6
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.3e-63 247.7 307 52.8
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 2.3e-63 246.9 300 53.3
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 3.9e-63 246.1 306 50.3
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 5.1e-63 245.7 306 51.6
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 2.5e-62 243.4 307 51.5
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 9.7e-62 241.5 315 50.2
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 2.8e-61 240.0 301 49.8
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 2.8e-61 240.0 301 50.8
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.7e-61 239.6 311 50.8
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 4.8e-61 239.2 305 50.2
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.1e-60 238.0 294 49.3
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.4e-60 237.7 293 51.5
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 2.4e-60 236.9 306 50.3
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 2.6e-59 233.4 308 51.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.4e-59 233.0 353 43.6
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.7e-58 230.7 305 51.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.8e-58 229.6 307 51.8
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 5.0e-58 229.2 302 49.7
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.4e-57 227.6 276 54.7
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.9e-57 227.3 314 49.0
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.5e-57 226.9 301 51.5
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 3.2e-57 226.5 310 50.3
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 5.5e-57 225.7 301 51.2
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.6e-56 224.2 301 50.2
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.6e-56 224.2 309 51.8
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.6e-56 224.2 301 49.2
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.1e-56 223.8 306 50.7
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 2.1e-56 223.8 310 50.0
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.7e-56 223.4 235 55.7
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.6e-56 222.6 215 58.6
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.0e-55 221.5 304 50.0
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.8e-55 220.7 230 56.1
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.3e-55 220.3 314 47.8
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.9e-55 219.5 303 51.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.3e-54 216.5 232 54.3
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.4e-54 215.3 177 65.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 6.9e-52 208.8 170 65.9
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.5e-51 206.1 122 81.1
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.5e-49 200.3 310 44.5
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.5e-49 199.1 259 50.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 7.2e-49 198.7 310 44.2
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.7e-48 196.8 307 43.0
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 8.8e-47 191.8 123 72.4
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.7e-45 187.6 174 60.3
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 4.8e-45 186.0 296 42.6
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.6e-43 180.3 304 41.8
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.0e-42 176.0 125 71.2
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.4e-41 174.5 292 41.8
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 4.2e-41 172.9 188 51.6
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.2e-40 171.4 300 41.0
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 5.7e-38 162.5 254 44.9
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.2e-37 160.6 165 53.9
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.5e-34 148.7 307 38.4
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.9e-33 147.5 303 37.0
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.2e-32 144.8 144 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.7e-32 143.7 308 37.0
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.7e-32 143.7 144 55.6
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 6.1e-32 142.5 295 36.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.8e-31 139.0 301 35.9
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.7e-24 116.3 75 74.7
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 6.8e-23 112.5 237 36.3
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 7.5e-22 109.0 154 48.7
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.8e-20 104.4 137 52.6
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.2e-19 101.7 182 39.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 4.2e-17 93.2 141 45.4
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 9.5e-17 92.0 114 50.9
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 2.3e-15 87.4 166 41.6
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.8e-13 80.5 58 65.5
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.7e-11 73.9 93 50.5
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 4.7e-08 63.2 95 41.1
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.0e-07 62.0 46 63.0
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 3.1e-07 60.5 55 56.4
Cre03.g154200 Chlamydomonas reinhardtii HOM05D004323 ORTHO05D005140 7.5e-06 55.8 114 37.7


User provided reference genes

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