Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.7e-52 209.1 109 100.0
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.4e-22 109.8 80 78.8
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 8.9e-22 107.1 77 79.2
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 2.0e-18 95.9 63 85.7
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 2.0e-18 95.9 63 85.7
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 3.5e-18 95.1 77 71.4
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 4.5e-18 94.7 71 73.2
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 4.5e-18 94.7 102 58.8
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 4.5e-18 94.7 102 58.8
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 4.5e-18 94.7 102 58.8
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 4.5e-18 94.7 102 58.8
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 4.5e-18 94.7 102 58.8
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 4.5e-18 94.7 102 58.8
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 7.8e-18 94.0 102 58.8
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.3e-17 92.4 63 84.1
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.3e-17 92.4 63 84.1
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.3e-17 92.4 63 84.1
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.3e-17 92.4 63 84.1
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 2.9e-17 92.0 63 82.5
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 2.9e-17 92.0 63 82.5
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 2.9e-17 92.0 63 82.5
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 2.9e-17 92.0 63 82.5
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 2.9e-17 92.0 63 82.5
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 2.9e-17 92.0 63 82.5
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.0e-17 91.3 63 82.5
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.0e-17 91.3 63 82.5
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.0e-17 91.3 63 82.5
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 1.1e-16 90.1 63 79.4
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 1.1e-16 90.1 63 79.4
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 1.5e-16 89.7 98 58.2
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 1.5e-16 89.7 101 56.4
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.5e-16 89.7 62 82.3
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 2.5e-16 89.0 107 57.0
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 4.3e-16 88.2 76 72.4
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 2.1e-15 85.9 63 77.8
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 2.1e-15 85.9 63 77.8
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 2.1e-15 85.9 63 77.8
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 2.1e-15 85.9 63 77.8
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 2.1e-15 85.9 63 77.8
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.8e-15 85.5 56 85.7
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.8e-15 85.5 56 85.7
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 2.8e-15 85.5 63 79.4
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 2.8e-15 85.5 63 79.4
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 3.6e-15 85.1 56 83.9
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 6.1e-15 84.3 63 76.2
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 6.1e-15 84.3 63 77.8
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 1.4e-14 83.2 63 76.2
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 1.8e-14 82.8 76 68.4
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 1.8e-14 82.8 76 68.4
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 2.3e-14 82.4 102 52.9
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 3.0e-14 82.0 63 77.8
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 5.2e-14 81.3 76 65.8
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 6.8e-14 80.9 55 80.0
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 8.9e-14 80.5 117 53.8
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 8.9e-14 80.5 63 76.2
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 8.9e-14 80.5 64 76.6
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 1.5e-13 79.7 63 76.2
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.0e-13 79.3 66 72.7
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 2.0e-13 79.3 63 74.6
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 3.4e-13 78.6 103 53.4
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 4.4e-13 78.2 62 72.6
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 4.4e-13 78.2 63 74.6
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 7.5e-13 77.4 63 68.3
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 3.7e-12 75.1 103 49.5
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 1.1e-11 73.6 71 66.2
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 1.9e-11 72.8 51 78.4
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 1.9e-11 72.8 52 78.8
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 1.9e-11 72.8 63 73.0
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 3.2e-11 72.0 102 49.0
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 7.0e-11 70.9 55 72.7
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 7.0e-11 70.9 102 48.0
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 9.2e-11 70.5 63 66.7
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.6e-10 69.7 52 76.9
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.6e-10 69.7 52 76.9
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.6e-10 69.7 52 76.9
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.0e-10 69.3 65 67.7
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 3.5e-10 68.6 63 66.7
Sed0024115 Sechium edule HOM05D004182 ORTHO05D007321 6.0e-10 67.8 63 69.8
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 7.8e-10 67.4 63 66.7
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 7.8e-10 67.4 63 66.7
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 7.8e-10 67.4 63 66.7
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 7.8e-10 67.4 63 66.7
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 2.3e-09 65.9 63 66.7
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 3.9e-09 65.1 63 63.5
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 6.6e-09 64.3 78 53.8
PGSC0003DMG400027964 Solanum tuberosum HOM05D004182 ORTHO05D007321 6.6e-09 64.3 52 73.1
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 8.6e-09 63.9 76 57.9
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 8.6e-09 63.9 65 64.6
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 8.6e-09 63.9 65 64.6
HPP92_028384 Vanilla planifolia HOM05D004182 ORTHO05D007321 8.6e-09 63.9 49 77.6
HPP92_028405 Vanilla planifolia HOM05D004182 ORTHO05D007321 8.6e-09 63.9 49 77.6
HPP92_028414 Vanilla planifolia HOM05D004182 ORTHO05D007321 8.6e-09 63.9 49 77.6
HPP92_028420 Vanilla planifolia HOM05D004182 ORTHO05D007321 8.6e-09 63.9 49 77.6
HPP92_028429 Vanilla planifolia HOM05D004182 ORTHO05D007321 8.6e-09 63.9 49 77.6
HPP92_028433 Vanilla planifolia HOM05D004182 ORTHO05D007321 8.6e-09 63.9 49 77.6
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 1.5e-08 63.2 79 53.2
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-08 62.0 79 51.9
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 5.6e-08 61.2 63 61.9
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 9.5e-08 60.5 76 56.6
Nn6g32823 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.2e-07 60.1 78 55.1
Nn8g40575 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.6e-07 59.7 48 72.9
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 3.6e-07 58.5 80 52.5
Phvul.010G035850 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 6.2e-07 57.8 58 63.8
CAN.G1119.15 Capsicum annuum HOM05D002978 ORTHO05D003339 1.4e-06 56.6 62 59.7
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.3e-06 55.8 47 74.5
Sed0012210 Sechium edule HOM05D004182 ORTHO05D007321 4.0e-06 55.1 63 57.1
BcaC05g26432 Brassica carinata HOM05D004182 ORTHO05D007321 8.9e-06 53.9 75 50.7


User provided reference genes

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