Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 9.9e-155 550.1 274 100.0
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 2.9e-98 362.5 266 68.8
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 7.2e-97 357.8 260 67.7
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 4.7e-96 355.1 266 68.4
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 2.4e-92 342.8 267 65.2
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 4.1e-92 342.0 265 64.9
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 7.0e-92 341.3 265 62.3
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 1.6e-91 340.1 266 65.0
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 3.5e-91 339.0 265 63.8
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 1.3e-90 337.0 266 63.5
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 1.7e-90 336.7 263 63.9
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 2.3e-90 336.3 271 63.1
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 2.3e-90 336.3 267 62.5
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.9e-90 335.9 273 60.8
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 6.6e-90 334.7 263 62.7
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 6.6e-90 334.7 266 64.3
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 8.6e-90 334.3 265 63.8
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 1.1e-89 334.0 265 61.9
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 1.9e-89 333.2 258 64.3
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 5.6e-89 331.6 265 64.2
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 7.3e-89 331.3 265 61.1
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 7.3e-89 331.3 266 63.2
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 2.1e-88 329.7 266 62.0
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 3.6e-88 328.9 266 62.0
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 3.6e-88 328.9 266 62.8
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 3.6e-88 328.9 240 65.8
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 4.7e-88 328.6 266 62.4
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 8.0e-88 327.8 265 61.9
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 8.0e-88 327.8 231 69.7
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 2.3e-87 326.2 260 64.2
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 3.0e-87 325.9 285 60.0
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 5.2e-87 325.1 263 62.7
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 8.9e-87 324.3 264 61.0
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 8.9e-87 324.3 265 60.0
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 8.9e-87 324.3 267 59.9
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 1.2e-86 323.9 268 62.3
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 1.2e-86 323.9 265 60.0
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 2.0e-86 323.2 265 61.9
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 4.4e-86 322.0 267 59.2
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 5.7e-86 321.6 264 60.2
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 7.5e-86 321.2 210 74.3
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 1.3e-85 320.5 266 61.3
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 1.7e-85 320.1 265 61.5
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 1.7e-85 320.1 289 57.1
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.2e-85 319.7 211 71.6
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 3.7e-85 318.9 266 60.5
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 4.9e-85 318.5 263 61.6
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 8.3e-85 317.8 301 55.8
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 1.2e-83 313.9 265 61.9
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 2.0e-83 313.2 265 60.4
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 2.7e-83 312.8 266 60.2
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 3.5e-83 312.4 265 61.9
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 4.6e-83 312.0 266 62.0
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 4.6e-83 312.0 275 57.5
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 7.8e-83 311.2 263 59.7
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.0e-82 310.8 283 56.9
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.0e-82 310.8 283 56.9
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 1.0e-82 310.8 264 59.8
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 1.7e-82 310.1 235 67.7
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 1.7e-82 310.1 266 58.6
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 2.3e-82 309.7 266 61.7
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 2.3e-82 309.7 267 59.2
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 3.9e-82 308.9 266 59.4
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 3.9e-82 308.9 266 59.4
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 5.0e-82 308.5 265 59.6
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 6.6e-82 308.1 266 60.5
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 6.6e-82 308.1 311 53.4
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 8.6e-82 307.8 294 53.7
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 1.5e-81 307.0 265 60.0
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 1.9e-81 306.6 269 60.2
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 1.9e-81 306.6 268 60.1
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 2.5e-81 306.2 281 57.7
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 3.3e-81 305.8 263 60.1
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 1.6e-80 303.5 271 62.0
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 2.1e-80 303.1 311 53.7
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 6.2e-80 301.6 263 59.3
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 6.2e-80 301.6 265 58.5
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 1.2e-78 297.4 268 57.5
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 3.4e-78 295.8 234 64.5
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 1.7e-77 293.5 267 56.6
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 1.7e-77 293.5 265 58.5
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 3.7e-77 292.4 289 55.0
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 8.3e-77 291.2 268 56.0
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 1.9e-76 290.0 277 54.5
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 4.1e-76 288.9 269 55.8
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 5.4e-76 288.5 235 61.7
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 3.9e-74 282.3 237 58.2
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 1.6e-72 276.9 180 73.3
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 2.8e-72 276.2 191 70.2
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 4.7e-72 275.4 265 54.7
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 2.3e-71 273.1 236 58.9
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 3.1e-71 272.7 210 64.8
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 2.0e-70 270.0 205 64.4
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 5.8e-70 268.5 191 71.2
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 5.8e-70 268.5 264 55.7
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 2.1e-67 260.0 239 55.2
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 2.7e-67 259.6 215 59.1
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 1.3e-66 257.3 190 67.4
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 1.7e-66 256.9 190 66.3
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 5.1e-66 255.4 217 56.7
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.3e-65 252.3 281 52.7
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 1.1e-63 247.7 190 65.8
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 5.2e-63 245.4 209 61.2
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 2.6e-62 243.0 208 59.1
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 3.4e-62 242.7 237 57.8
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 7.6e-62 241.5 168 69.6
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 6.0e-59 231.9 214 56.1
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 1.7e-58 230.3 213 58.7
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 5.1e-58 228.8 206 55.8
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 6.6e-58 228.4 219 56.2
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 7.3e-57 224.9 157 66.9
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 6.2e-56 221.9 163 68.7
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.7e-53 213.8 205 54.1
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 7.1e-52 208.4 227 52.4
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 7.8e-51 204.9 192 54.7
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 1.5e-49 200.7 253 45.5
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 3.3e-49 199.5 259 41.7
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 3.1e-47 193.0 247 42.9
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 1.7e-45 187.2 265 43.4
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 2.2e-45 186.8 235 44.7
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 2.1e-43 180.3 265 42.6
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.0e-42 177.9 160 56.9
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 5.1e-42 175.6 191 51.8
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.1e-39 167.9 174 52.9
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.4e-39 167.5 174 52.9
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 9.9e-38 161.4 138 59.4
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 5.5e-36 155.6 135 57.0
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 8.7e-34 148.3 188 42.6
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 3.4e-30 136.3 128 58.6
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 1.5e-22 110.9 205 38.0
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 2.8e-16 90.1 73 63.0
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 1.9e-12 77.4 126 38.9
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 4.2e-12 76.3 63 54.0
CDE02G3151 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 6.1e-11 72.4 85 42.4
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 1.3e-08 64.7 104 35.6
Zm00001eb049210 Zea mays HOM05D001870 ORTHO05D001797 2.6e-06 57.0 59 50.8
Zm00001eb265170 Zea mays HOM05D001689 ORTHO05D001643 2.6e-06 57.0 59 50.8


User provided reference genes

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