Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1947.6 1008 100.0
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 1.5e-301 1039.6 1012 56.1
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 6.2e-295 1017.7 1016 54.5
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 2.8e-287 992.3 1016 52.2
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.2e-282 976.9 1016 52.1
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 3.3e-280 968.8 1008 50.5
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 1.4e-278 963.4 1009 52.1
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 3.1e-278 962.2 1056 50.5
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 1.5e-277 959.9 1016 50.0
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 7.1e-275 951.0 1008 50.0
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 1.8e-273 946.4 967 53.1
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 6.7e-273 944.5 1024 51.6
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 1.5e-272 943.3 1016 51.2
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 4.3e-272 941.8 944 53.2
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 5.8e-269 931.4 1006 49.9
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 4.9e-268 928.3 1006 49.6
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 1.4e-262 910.2 1015 49.4
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.0e-260 904.0 1005 48.7
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 9.3e-259 897.5 1011 47.2
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 1.2e-258 897.1 1011 47.1
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 7.9e-258 894.4 1006 50.0
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 5.1e-257 891.7 1012 47.8
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 3.3e-256 889.0 1006 48.4
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 1.2e-253 880.6 1017 48.6
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.3e-252 877.1 1016 49.2
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 5.0e-252 875.2 1001 47.1
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.4e-251 873.6 1016 48.0
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.5e-251 872.8 1027 48.5
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 1.4e-249 867.1 1006 47.0
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 3.9e-249 865.5 1056 45.8
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 2.4e-246 856.3 1009 46.6
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 6.9e-246 854.7 1009 46.3
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 1.5e-245 853.6 1021 46.8
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 5.9e-245 851.7 943 48.5
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 6.5e-244 848.2 1011 46.9
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 3.2e-243 845.9 904 51.4
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 3.9e-241 839.0 1002 46.3
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 5.1e-241 838.6 879 51.3
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 6.3e-239 831.6 1001 46.3
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 1.2e-237 827.4 1026 45.3
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 5.5e-235 818.5 1003 45.0
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 1.2e-234 817.4 955 46.9
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 3.6e-234 815.8 1068 44.9
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 1.0e-233 814.3 1035 44.6
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.5e-232 810.4 1051 44.6
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.2e-229 800.8 996 45.0
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 5.9e-229 798.5 991 46.1
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 7.7e-229 798.1 998 44.9
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 6.5e-228 795.0 968 46.7
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 5.5e-227 792.0 987 45.4
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 1.2e-226 790.8 1028 44.0
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 6.1e-226 788.5 966 45.7
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 1.0e-225 787.7 998 44.6
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.4e-225 787.3 1042 45.4
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 1.7e-223 780.4 972 45.1
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 4.8e-223 778.9 1005 44.1
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 6.3e-223 778.5 967 45.4
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 4.5e-221 772.3 893 47.8
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 2.2e-220 770.0 1026 44.2
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 3.6e-218 762.7 1028 43.4
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 5.4e-214 748.8 913 46.0
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 1.0e-212 744.6 995 42.5
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 3.8e-212 742.7 903 46.2
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 5.5e-211 738.8 1014 42.4
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 3.4e-208 729.6 828 47.6
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 4.4e-208 729.2 1007 41.0
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 7.5e-208 728.4 1007 40.9
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.7e-207 727.2 1002 41.3
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 6.3e-207 725.3 899 45.9
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 8.3e-207 724.9 994 41.5
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 3.2e-206 723.0 997 40.7
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 5.4e-206 722.2 992 41.0
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 7.0e-206 721.8 1001 41.0
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 1.2e-205 721.1 1005 41.7
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 7.8e-205 718.4 1029 40.8
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.7e-204 717.2 902 44.7
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 6.6e-204 715.3 993 40.6
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 3.3e-203 713.0 999 40.8
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 1.2e-202 711.1 909 43.5
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 1.0e-201 708.0 924 45.6
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 1.4e-201 707.6 1036 42.8
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 4.0e-201 706.1 1018 39.5
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 5.4e-198 695.7 1041 42.0
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 7.0e-198 695.3 994 40.0
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 3.5e-197 693.0 773 48.5
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 1.0e-196 691.4 882 43.9
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 5.8e-192 675.6 940 42.2
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 1.2e-184 651.4 1010 40.0
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 3.5e-181 639.8 812 44.0
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 8.6e-180 635.2 1018 38.3
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 8.1e-178 628.6 968 37.8
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 3.9e-172 609.8 902 39.5
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 8.7e-172 608.6 711 48.2
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 1.5e-168 597.8 832 41.1
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 3.9e-164 583.2 660 46.1
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 2.9e-159 567.0 1041 35.6
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 1.9e-158 564.3 678 45.4
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.6e-146 524.6 942 37.4
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 1.9e-139 501.1 879 36.2
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 2.6e-128 464.2 933 34.6
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 3.6e-109 400.6 1006 28.7
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.7e-66 258.8 648 31.2
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.3e-58 232.6 926 25.2
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 1.8e-47 195.7 277 41.9
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 3.1e-44 184.9 191 51.8
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 6.9e-44 183.7 326 36.8
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.1e-41 176.4 697 25.3
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 7.9e-40 170.2 662 27.3
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 6.5e-26 124.0 149 49.0
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 7.2e-25 120.6 631 23.1
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 8.7e-23 113.6 790 23.0
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 1.1e-20 106.7 136 43.4
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 4.2e-09 68.2 110 32.7


User provided reference genes

Program Settings