Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0004320 Simmondsia chinensis HOM05D007167 ORTHO05D013628 0.0e+00 1173.3 581 100.0
Sc14g0003700 Simmondsia chinensis HOM05D007167 ORTHO05D013628 0.0e+00 1171.8 581 99.8
Sc14g0003870 Simmondsia chinensis HOM05D007167 ORTHO05D013628 0.0e+00 1166.4 578 99.8
ScUNg0000250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 0.0e+00 1164.1 578 99.7
Sc14g0004250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 0.0e+00 1131.7 578 97.6
ScUNg0001330 Simmondsia chinensis HOM05D007167 ORTHO05D013628 0.0e+00 1125.5 578 97.4
Sc02g0009550 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.2e-304 1047.3 519 99.8
Sc14g0004160 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.2e-304 1047.3 519 99.8
Sc14g0004270 Simmondsia chinensis HOM05D007167 ORTHO05D000205 2.1e-303 1045.0 519 99.6
Sc18g0006310 Simmondsia chinensis HOM05D007167 ORTHO05D001745 1.4e-302 1042.3 519 99.8
ScUNg0000790 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.8e-283 978.8 534 91.9
ScUNg0000910 Simmondsia chinensis HOM05D007167 ORTHO05D013628 3.8e-265 917.9 462 98.7
ScUNg0000780 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.2e-219 765.0 372 99.7
Sc14g0003760 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.6e-184 649.4 362 89.8
ScUNg0001250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.8e-169 600.1 290 100.0
ScUNg0001050 Simmondsia chinensis HOM05D007167 ORTHO05D001679 1.6e-133 480.7 230 100.0
Sc18g0006340 Simmondsia chinensis HOM05D007167 ORTHO05D000922 1.3e-132 477.6 229 99.6
Sc14g0003940 Simmondsia chinensis HOM05D007167 ORTHO05D013628 6.2e-106 389.0 259 78.0
ScUNg0000170 Simmondsia chinensis HOM05D007167 ORTHO05D000922 3.5e-101 373.2 180 100.0
ScUNg0000050 Simmondsia chinensis HOM05D007167 ORTHO05D000922 5.5e-78 296.2 142 100.0
ScUNg0001450 Simmondsia chinensis HOM05D007167 ORTHO05D001745 3.1e-73 280.4 143 94.4
Sc14g0004120 Simmondsia chinensis HOM05D000099 ORTHO05D000205 3.2e-54 217.2 137 83.9
Sc14g0004200 Simmondsia chinensis HOM05D000099 ORTHO05D001070 2.5e-38 164.5 78 100.0
ScUNg0000940 Simmondsia chinensis HOM05D007167 ORTHO05D013628 9.5e-30 136.0 79 78.5
Sc21g0003530 Simmondsia chinensis HOM05D008177 ORTHO05D010128 1.4e-28 132.1 103 64.1
Sc12g0000010 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.3e-28 131.3 71 91.5
Sc14g0004040 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.3e-28 131.3 71 91.5
Sc14g0004080 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.3e-28 131.3 71 91.5
Sc14g0004280 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.3e-28 131.3 71 91.5
Sc14g0004310 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.3e-28 131.3 71 91.5
ScUNg0000500 Simmondsia chinensis HOM05D013320 ORTHO05D001679 3.1e-28 131.0 88 78.4
Sc14g0004350 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0000310 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0000660 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0000690 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0000730 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0000880 Simmondsia chinensis HOM05D007167 ORTHO05D000922 9.8e-27 125.9 68 91.2
ScUNg0000980 Simmondsia chinensis HOM05D007167 ORTHO05D000922 9.8e-27 125.9 68 91.2
ScUNg0001240 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0001280 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0001370 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0001420 Simmondsia chinensis HOM05D007167 ORTHO05D001679 9.8e-27 125.9 68 91.2
ScUNg0001460 Simmondsia chinensis HOM05D007167 ORTHO05D000922 9.8e-27 125.9 68 91.2
ScUNg0000440 Simmondsia chinensis HOM05D013320 ORTHO05D000922 1.3e-26 125.6 85 77.6
Sc14g0003770 Simmondsia chinensis HOM05D007167 ORTHO05D001070 3.7e-26 124.0 61 98.4
Atru.chr10.38 Acer truncatum HOM05D007167 ORTHO05D001679 1.2e-24 119.0 66 89.4
Sc02g0009430 Simmondsia chinensis HOM05D007167 ORTHO05D001679 6.0e-24 116.7 54 100.0
arahy.Tifrunner.gnm1.ann1.ET488V Arachis hypogaea HOM05D007167 ORTHO05D001679 1.0e-23 115.9 57 96.5
Rhsim05G0123600 Rhododendron simsii HOM05D016882 ORTHO05D001745 1.0e-23 115.9 57 96.5
Lj5g0012521 Lotus japonicus HOM05D007167 ORTHO05D001679 1.3e-23 115.5 66 87.9
Lj5g0016692 Lotus japonicus HOM05D007167 ORTHO05D001679 1.3e-23 115.5 66 87.9
Lj6g0017867 Lotus japonicus HOM05D007167 ORTHO05D001679 1.3e-23 115.5 66 87.9
LjContig00006g0001730 Lotus japonicus HOM05D007167 ORTHO05D001679 1.3e-23 115.5 66 87.9
unitig_145.g32368 Utricularia gibba HOM05D007167 ORTHO05D001679 1.3e-23 115.5 57 96.5
unitig_668.g29633 Utricularia gibba HOM05D007167 ORTHO05D001679 1.3e-23 115.5 57 96.5
Medtr0021s0120 Medicago truncatula HOM05D007167 ORTHO05D010211 2.3e-23 114.8 66 86.4
Psat0s8399g0040 Pisum sativum HOM05D007167 ORTHO05D001679 2.3e-23 114.8 66 86.4
EL10Ac5g11394 Beta vulgaris HOM05D007167 ORTHO05D000922 3.0e-23 114.4 62 87.1
CsaV3_UNG240550 Cucumis sativus L. HOM05D007167 ORTHO05D001679 5.6e-22 110.2 60 90.0
EL10Ac2g03014 Beta vulgaris HOM05D007167 ORTHO05D001679 7.3e-22 109.8 57 93.0
LjContig00547g0012562 Lotus japonicus HOM05D007167 ORTHO05D001679 1.6e-21 108.6 53 96.2
Sc14g0003330 Simmondsia chinensis HOM05D007167 ORTHO05D010128 1.6e-21 108.6 77 72.7
Sc06g0002460 Simmondsia chinensis HOM05D007167 ORTHO05D001679 5.2e-20 103.6 76 75.0
Mapoly4038s0001 Marchantia polymorpha HOM05D007167 ORTHO05D001679 1.5e-19 102.1 57 86.0
unitig_245.g35372 Utricularia gibba HOM05D007167 ORTHO05D001679 1.5e-19 102.1 48 97.9
arahy.Tifrunner.gnm1.ann1.XTZD9Y Arachis hypogaea HOM05D007167 ORTHO05D001679 4.4e-19 100.5 56 87.5
Sc06g0003840 Simmondsia chinensis HOM05D007167 ORTHO05D004854 4.9e-18 97.1 71 69.0
ScUNg0000970 Simmondsia chinensis HOM05D007167 ORTHO05D009885 2.7e-16 91.3 69 72.5
Sed0028154 Sechium edule HOM05D007167 ORTHO05D001679 6.0e-16 90.1 41 100.0
EL10As19g24181 Beta vulgaris HOM05D007167 ORTHO05D001679 7.8e-16 89.7 50 88.0
SHI35535 Sapria himalayana HOM05D015261 ORTHO05D001679 5.6e-14 83.6 55 72.7
SHI35536 Sapria himalayana HOM05D015261 ORTHO05D000626 5.6e-14 83.6 55 72.7
SHI35538 Sapria himalayana HOM05D015261 ORTHO05D001679 5.6e-14 83.6 55 72.7
SHI39806 Sapria himalayana HOM05D015261 ORTHO05D001679 5.6e-14 83.6 55 72.7
SHI39841 Sapria himalayana HOM05D015261 ORTHO05D001679 5.6e-14 83.6 55 72.7
Sc07g0005250 Simmondsia chinensis HOM05D007167 ORTHO05D001679 6.8e-12 76.6 64 62.5
CBR_g28706 Chara braunii HOM05D010018 ORTHO05D003704 1.3e-10 72.4 44 77.3
Sc21g0003540 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.2e-10 71.6 213 36.2
MCO14G190 Micromonas commoda HOM05D007167 ORTHO05D001679 4.9e-10 70.5 37 83.8
MCO14G191 Micromonas commoda HOM05D007167 ORTHO05D001679 4.9e-10 70.5 37 83.8
MCO14G192 Micromonas commoda HOM05D007167 ORTHO05D001679 4.9e-10 70.5 37 83.8
QL93p0473_0011 Quercus lobata HOM05D016732 ORTHO05D001679 4.9e-10 70.5 41 78.0
QL93p0473_0019 Quercus lobata HOM05D016732 ORTHO05D001679 4.9e-10 70.5 41 78.0
QL93p0473_0029 Quercus lobata HOM05D016732 ORTHO05D001679 4.9e-10 70.5 41 78.0
QL93p0539_0002 Quercus lobata HOM05D016732 ORTHO05D001679 4.9e-10 70.5 41 78.0
QL93p0853_0005 Quercus lobata HOM05D016732 ORTHO05D001679 4.9e-10 70.5 41 78.0
Thecc.07G180900 Theobroma cacao HOM05D007167 ORTHO05D001679 4.9e-10 70.5 50 70.0
ScUNg0000320 Simmondsia chinensis HOM05D007167 ORTHO05D013628 8.3e-10 69.7 58 60.3
TAR408G0001 Trochodendron aralioides HOM05D007167 ORTHO05D001679 2.4e-09 68.2 41 75.6
QL93p0943_0001 Quercus lobata HOM05D016732 ORTHO05D001679 1.6e-08 65.5 40 75.0
CSS0027849 Camellia sinensis var. sinensis HOM05D001828 ORTHO05D001745 3.5e-08 64.3 180 35.6
arahy.Tifrunner.gnm1.ann1.62DUUZ Arachis hypogaea HOM05D003608 ORTHO05D000917 6.6e-07 60.1 248 32.7
arahy.Tifrunner.gnm1.ann1.J69F6A Arachis hypogaea HOM05D003608 ORTHO05D000917 6.6e-07 60.1 120 41.7
Sc21g0003500 Simmondsia chinensis HOM05D007167 ORTHO05D014130 2.5e-06 58.2 49 63.3


User provided reference genes

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