Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0003540 Simmondsia chinensis HOM05D009209 ORTHO05D011057 6.7e-69 263.8 129 100.0
Sc15g0002150 Simmondsia chinensis HOM05D009209 ORTHO05D011057 5.6e-23 111.3 97 56.7
Sc07g0006130 Simmondsia chinensis HOM05D009209 ORTHO05D009629 2.4e-18 95.9 105 45.7
Sc15g0003590 Simmondsia chinensis HOM05D009209 ORTHO05D011057 2.0e-17 92.8 105 47.6
Sc21g0001930 Simmondsia chinensis HOM05D009209 ORTHO05D011057 7.3e-15 84.3 78 52.6
Sc13g0007280 Simmondsia chinensis HOM05D009209 ORTHO05D011057 1.6e-14 83.2 104 42.3
Sc04g0002380 Simmondsia chinensis HOM05D009209 ORTHO05D011057 2.3e-13 79.3 65 49.2
Actinidia04023 Actinidia chinensis HOM05D012898 ORTHO05D011057 5.2e-13 78.2 83 41.0
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 7.5e-12 74.3 104 38.5
Rhsim09G0042800 Rhododendron simsii HOM05D017214 ORTHO05D018100 2.2e-11 72.8 104 37.5
Sc03g0004030 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.2e-11 72.8 87 42.5
Sc03g0004050 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.2e-11 72.8 87 42.5
Sc15g0000710 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.9e-11 72.4 55 61.8
Sc07g0006280 Simmondsia chinensis HOM05D009209 ORTHO05D011057 8.3e-11 70.9 87 39.1
COL.COLO4_32924 Corchorus olitorius HOM05D011882 ORTHO05D015081 1.9e-10 69.7 106 34.9
Duzib170G0053 Durio zibethinus HOM05D037386 ORTHO05D035091 4.1e-10 68.6 105 41.0
Ah.12g063050 Amaranthus hybridus HOM05D000030 ORTHO05D000009 5.4e-10 68.2 84 39.3
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.4e-10 68.2 120 33.3
Sc23g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.4e-10 68.2 97 36.1
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 5.4e-10 68.2 108 34.3
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 9.2e-10 67.4 99 32.3
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.2e-10 67.4 83 37.3
Sc09g0002060 Simmondsia chinensis HOM05D009348 ORTHO05D010856 9.2e-10 67.4 101 34.7
CSS0012554 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 1.2e-09 67.0 99 38.4
vmacro12730 Vaccinium macrocarpon HOM05D002015 ORTHO05D011057 1.2e-09 67.0 94 34.0
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 1.2e-09 67.0 90 36.7
Actinidia23250 Actinidia chinensis HOM05D012898 ORTHO05D009356 1.6e-09 66.6 102 31.4
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-09 66.6 93 36.6
Sc02g0004050 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.6e-09 66.6 102 33.3
Actinidia11796 Actinidia chinensis HOM05D002604 ORTHO05D009356 2.7e-09 65.9 94 35.1
Actinidia24024 Actinidia chinensis HOM05D023450 ORTHO05D023249 2.7e-09 65.9 81 38.3
Ah.08g221330 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.7e-09 65.9 83 39.8
CSS0043342 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 2.7e-09 65.9 96 37.5
Sc23g0004070 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.5e-09 65.5 80 37.5
Ah.11g040120 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.0e-09 64.7 82 34.1
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 7.8e-09 64.3 90 31.1
Sc13g0005400 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.8e-09 64.3 91 35.2
Ah.08g219520 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.0e-08 63.9 109 34.9
Sc03g0005750 Simmondsia chinensis HOM05D009348 ORTHO05D011705 1.0e-08 63.9 101 33.7
Sc10g0004010 Simmondsia chinensis HOM05D031748 ORTHO05D011057 1.0e-08 63.9 67 41.8
CSS0018658 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.3e-08 63.5 103 34.0
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.3e-08 63.5 120 31.7
Sc01g0006920 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.7e-08 63.2 101 34.7
Sc18g0002450 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.7e-08 63.2 97 37.1
Ah.07g198450 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.3e-08 62.8 84 39.3
CSS0029903 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.3e-08 62.8 98 35.7
Gohir.A04G039650 Gossypium hirsutum HOM05D011882 ORTHO05D015081 2.3e-08 62.8 86 37.2
Sc26g0001380 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.0e-08 62.4 110 32.7
CSS0016458 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 5.0e-08 61.6 111 29.7
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 5.0e-08 61.6 113 31.9
Rhsim10G0189500 Rhododendron simsii HOM05D019536 ORTHO05D011057 6.6e-08 61.2 84 34.5
Ah.05g173090 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.6e-08 60.8 69 37.7
Sc05g0005650 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.6e-08 60.8 78 35.9
Ah.14g081710 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.1e-07 60.5 82 34.1
Rhsim03G0015400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.1e-07 60.5 125 30.4
Sc07g0006510 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.1e-07 60.5 122 36.1
Sc16g0003440 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.1e-07 60.5 99 35.4
Ah.06g183510 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.5e-07 60.1 92 33.7
Ah.02g117550 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.9e-07 59.7 95 31.6
Sc19g0006300 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.9e-07 59.7 109 31.2
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.5e-07 59.3 96 31.2
Sc08g0005990 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.5e-07 59.3 71 36.6
vmacro17834 Vaccinium macrocarpon HOM05D000412 ORTHO05D002774 2.5e-07 59.3 84 35.7
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.3e-07 58.5 105 27.6
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.3e-07 58.5 83 38.6
Rhsim10G0184600 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.3e-07 58.5 96 31.2
RhsimUnG0052900 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.3e-07 58.5 96 31.2
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.3e-07 58.5 108 30.6
Sc06g0006000 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.3e-07 58.5 75 33.3
Sc20g0002870 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.3e-07 58.5 95 33.7
Sc16g0005360 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.3e-07 57.8 99 31.3
Sc26g0003190 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.3e-07 57.8 98 33.7
vmacro16299 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 9.5e-07 57.4 80 37.5
Rhsim01G0127900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-06 57.0 78 37.2
TPR.G13239 Trifolium pratense HOM05D000845 ORTHO05D009756 1.2e-06 57.0 87 33.3
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.8e-06 55.8 113 33.6
Ah.07g196620 Amaranthus hybridus HOM05D008762 ORTHO05D031041 2.8e-06 55.8 116 31.0
Ah.11g045590 Amaranthus hybridus HOM05D000851 ORTHO05D003960 2.8e-06 55.8 118 28.8
CSS0025679 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.8e-06 55.8 90 36.7
Sc06g0004220 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.8e-06 55.8 113 32.7
Ah.05g168240 Amaranthus hybridus HOM05D000428 ORTHO05D000582 3.6e-06 55.5 91 33.0
Medtr6g477870 Medicago truncatula HOM05D001197 ORTHO05D000124 3.6e-06 55.5 90 31.1
Rhsim02G0133000 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.6e-06 55.5 72 33.3
Actinidia25138 Actinidia chinensis HOM05D001869 ORTHO05D002013 4.7e-06 55.1 87 35.6
Actinidia32115 Actinidia chinensis HOM05D000428 ORTHO05D000582 4.7e-06 55.1 98 33.7
Cc06_g06210 Coffea canephora HOM05D000142 ORTHO05D000124 4.7e-06 55.1 79 36.7
Actinidia21726 Actinidia chinensis HOM05D000428 ORTHO05D000582 6.2e-06 54.7 110 30.9
EL10Ac5g10790 Beta vulgaris HOM05D008976 ORTHO05D011121 6.2e-06 54.7 117 28.2
CSS0024781 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 6.2e-06 54.7 99 29.3
Sc01g0000330 Simmondsia chinensis HOM05D009348 ORTHO05D010856 6.2e-06 54.7 97 32.0
Lj2g0019090 Lotus japonicus HOM05D008220 ORTHO05D010358 8.1e-06 54.3 112 28.6
Lj6g0001371 Lotus japonicus HOM05D008220 ORTHO05D010358 8.1e-06 54.3 108 30.6
LjContig00357g0008125 Lotus japonicus HOM05D008220 ORTHO05D010358 8.1e-06 54.3 134 26.9
Manes.04G135800 Manihot esculenta HOM05D000428 ORTHO05D000582 8.1e-06 54.3 89 34.8
Nn2g12601 Nelumbo nucifera HOM05D001197 ORTHO05D000124 8.1e-06 54.3 93 29.0
Sed0002687 Sechium edule HOM05D000142 ORTHO05D000124 8.1e-06 54.3 83 36.1
Sc17g0003640 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.1e-06 54.3 66 36.4


User provided reference genes

Program Settings