Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.8e-105 384.8 189 100.0
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.6e-61 239.2 189 64.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.4e-61 238.8 190 63.7
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.4e-61 238.8 167 70.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 7.5e-61 237.7 188 62.2
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.8e-61 237.3 191 63.4
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 9.8e-61 237.3 189 64.6
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.7e-60 236.5 167 70.1
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-60 236.1 191 62.8
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.7e-60 235.3 188 63.8
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.1e-59 233.8 191 63.4
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.9e-59 233.0 165 67.9
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.4e-59 232.6 184 62.0
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.2e-59 232.3 190 65.3
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.4e-59 231.5 130 82.3
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 9.2e-59 230.7 190 61.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 9.2e-59 230.7 191 62.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 9.2e-59 230.7 190 60.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.2e-58 230.3 168 65.5
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 2.1e-58 229.6 171 67.3
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 2.1e-58 229.6 158 70.3
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.8e-58 227.6 184 61.4
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 7.8e-58 227.6 142 74.6
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.0e-57 227.3 141 75.2
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.3e-57 226.9 187 62.0
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.3e-57 226.9 184 60.3
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 3.0e-57 225.7 184 60.3
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-57 225.7 129 82.2
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 3.9e-57 225.3 189 60.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.1e-57 224.9 179 61.5
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.1e-57 224.9 187 61.0
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 6.6e-57 224.6 143 74.8
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 8.6e-57 224.2 174 64.4
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 8.6e-57 224.2 141 75.2
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 8.6e-57 224.2 179 61.5
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.6e-57 224.2 142 74.6
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.1e-56 223.8 142 73.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.1e-56 223.8 167 67.7
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.1e-56 223.8 149 71.1
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.5e-56 223.4 189 61.9
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.5e-56 223.4 142 74.6
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.5e-56 223.4 179 60.3
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.5e-56 223.4 128 79.7
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.9e-56 223.0 179 61.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.5e-56 222.6 142 73.9
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 3.3e-56 222.2 188 60.1
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 7.3e-56 221.1 152 71.7
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 9.5e-56 220.7 130 78.5
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 9.5e-56 220.7 193 57.5
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.2e-55 220.3 189 59.3
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.6e-55 219.9 130 78.5
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.1e-55 219.5 179 59.8
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.8e-55 219.2 184 58.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.8e-55 219.2 130 76.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.6e-55 218.8 147 69.4
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 4.7e-55 218.4 134 72.4
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 4.7e-55 218.4 153 69.3
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 6.2e-55 218.0 130 77.7
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 6.2e-55 218.0 130 76.2
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 8.1e-55 217.6 145 69.0
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 8.1e-55 217.6 173 61.3
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.4e-54 216.9 189 56.6
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.4e-54 216.9 187 58.3
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 2.3e-54 216.1 224 50.4
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.3e-54 216.1 187 58.3
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.1e-54 215.7 187 56.7
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 5.2e-54 214.9 190 57.9
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 5.2e-54 214.9 134 73.1
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 6.8e-54 214.5 128 75.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 6.8e-54 214.5 144 68.1
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 6.8e-54 214.5 165 62.4
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 8.9e-54 214.2 153 67.3
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.2e-53 213.8 130 75.4
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.0e-53 213.0 187 56.1
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.6e-53 212.6 189 56.6
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.6e-53 212.6 130 74.6
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 2.6e-53 212.6 207 53.6
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 3.4e-53 212.2 135 72.6
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 4.4e-53 211.8 130 74.6
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 4.4e-53 211.8 142 69.7
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 5.8e-53 211.5 150 69.3
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 5.8e-53 211.5 150 66.7
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 7.5e-53 211.1 183 57.4
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 9.9e-53 210.7 167 62.9
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.3e-52 210.3 188 57.4
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.7e-52 209.9 140 70.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.2e-52 209.5 128 73.4
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.2e-52 209.5 128 74.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.9e-52 209.1 137 69.3
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 2.9e-52 209.1 137 69.3
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.7e-52 208.8 138 68.8
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 6.4e-52 208.0 140 73.6
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 6.4e-52 208.0 150 67.3
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 6.4e-52 208.0 137 68.6
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 6.4e-52 208.0 190 57.4
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 6.4e-52 208.0 188 58.0
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-51 207.2 140 70.0
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.1e-51 207.2 152 63.2
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.1e-51 207.2 187 56.7
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.9e-51 206.5 177 58.2
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.9e-51 206.5 187 57.8
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 4.1e-51 205.3 129 74.4
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 5.4e-51 204.9 151 67.5
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 9.2e-51 204.1 137 68.6
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.1e-50 203.0 130 72.3
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 3.5e-50 202.2 145 65.5
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.0e-50 201.4 143 68.5
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.0e-49 200.7 139 66.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.3e-49 200.3 168 58.9
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.7e-49 199.9 139 69.8
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 2.3e-49 199.5 187 55.1
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.9e-48 196.4 253 43.1
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.9e-48 196.4 130 71.5
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 2.5e-48 196.1 174 58.6
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.3e-48 195.7 114 77.2
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 4.3e-48 195.3 117 74.4
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.6e-47 193.4 196 51.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 2.1e-47 193.0 128 71.1
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.1e-46 190.7 128 72.7
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-46 190.7 277 40.1
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 7.1e-43 177.9 149 61.1
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.2e-43 177.6 158 57.6
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 2.3e-41 172.9 118 66.9
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 3.9e-41 172.2 123 65.0
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 6.9e-38 161.4 124 59.7
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 8.4e-36 154.5 125 55.2
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.2e-35 152.5 87 75.9
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.9e-33 145.6 87 77.0
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 9.0e-30 134.4 80 81.2
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 2.0e-29 133.3 130 56.2
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 3.4e-29 132.5 116 55.2
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 4.2e-27 125.6 72 75.0
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.1e-27 124.8 86 66.3
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.6e-26 123.6 83 73.5
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.6e-26 123.6 78 69.2
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 6.7e-25 118.2 72 68.1
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.4e-22 110.5 65 69.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.2e-21 107.5 103 47.6
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 6.4e-20 101.7 117 38.5
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 9.3e-19 97.8 66 71.2
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.2e-18 97.4 59 74.6
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.9e-09 65.9 49 67.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.9e-08 63.5 52 53.8
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 7.4e-08 61.6 35 68.6


User provided reference genes

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