Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0002730 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.6e-129 466.1 233 100.0
Sc05g0000340 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.7e-86 323.2 391 48.3
COL.COLO4_35012 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.8e-24 117.1 260 31.2
AUR62031947 Chenopodium quinoa HOM05D004028 ORTHO05D004844 3.0e-19 99.8 152 38.2
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 3.9e-19 99.4 145 37.2
COL.COLO4_34968 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.1e-18 97.8 127 43.3
COL.COLO4_34971 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.5e-18 97.4 115 45.2
Cc09_g08350 Coffea canephora HOM05D004028 ORTHO05D004844 5.7e-18 95.5 146 41.8
Lsat_1_v5_gn_8_94080 Lactuca sativa HOM05D004028 ORTHO05D004844 1.7e-17 94.0 143 42.7
Phvul.009G199800 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 3.7e-17 92.8 153 34.6
arahy.Tifrunner.gnm1.ann1.B5Y4IK Arachis hypogaea HOM05D004028 ORTHO05D004844 4.8e-17 92.4 143 39.2
Glyma.06G212100 Glycine max HOM05D004028 ORTHO05D004844 1.1e-16 91.3 161 34.2
Sc12g0009040 Simmondsia chinensis HOM05D004028 ORTHO05D004844 5.3e-16 89.0 207 30.9
Potri.006G187000 Populus trichocarpa HOM05D004028 ORTHO05D004844 1.6e-15 87.4 153 37.3
COL.COLO4_34966 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.0e-15 87.0 117 41.9
ECA236G2741 Erigeron canadensis HOM05D004028 ORTHO05D004844 2.0e-15 87.0 150 36.7
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 4.5e-15 85.9 151 38.4
COL.COLO4_34965 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.0e-14 84.7 113 43.4
Ciclev10010748m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.7e-14 84.0 135 40.0
Duzib168G0223 Durio zibethinus HOM05D004028 ORTHO05D004844 1.7e-14 84.0 349 24.9
Gorai.001G002900 Gossypium raimondii HOM05D004028 ORTHO05D004844 1.7e-14 84.0 160 35.0
Hma1.2p1_0018F.1_g013000 Hydrangea macrophylla HOM05D004028 ORTHO05D004844 1.7e-14 84.0 133 36.1
GSVIVG01017205001 Vitis vinifera HOM05D004028 ORTHO05D004844 1.7e-14 84.0 163 35.0
AUR62022234 Chenopodium quinoa HOM05D004028 ORTHO05D004844 2.2e-14 83.6 78 50.0
Gohir.D07G003000 Gossypium hirsutum HOM05D004028 ORTHO05D004844 6.5e-14 82.0 140 36.4
Gorai.001G003000 Gossypium raimondii HOM05D004028 ORTHO05D004844 6.5e-14 82.0 140 36.4
AUR62031946 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.9e-13 80.5 78 47.4
arahy.Tifrunner.gnm1.ann1.65GG0R Arachis hypogaea HOM05D004028 ORTHO05D004844 2.5e-13 80.1 143 37.8
Gohir.D07G002950 Gossypium hirsutum HOM05D004028 ORTHO05D004844 3.2e-13 79.7 150 34.7
Aqoxy7G01945 Aquilegia oxysepala HOM05D004028 ORTHO05D004844 5.5e-13 79.0 124 38.7
Ciclev10010489m.g Citrus clementina HOM05D004028 ORTHO05D004844 5.5e-13 79.0 137 35.8
CiPaw.01G242300 Carya illinoinensis HOM05D004028 ORTHO05D004844 1.2e-12 77.8 133 38.3
HanXRQChr14g0455571 Helianthus annuus HOM05D004028 ORTHO05D004844 1.2e-12 77.8 142 38.0
Ciclev10010305m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.6e-12 77.4 124 37.1
Gohir.A07G002700 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.6e-12 77.4 113 38.9
Medtr4g011610 Medicago truncatula HOM05D004028 ORTHO05D004844 2.1e-12 77.0 134 34.3
PSO017G1888 Papaver somniferum HOM05D004028 ORTHO05D004844 2.7e-12 76.6 164 30.5
PSO170G5200 Papaver somniferum HOM05D004028 ORTHO05D004844 3.6e-12 76.3 164 30.5
Ciclev10024778m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.0e-11 74.7 131 34.4
CANSAT56G0144 Cannabis sativa HOM05D004028 ORTHO05D004844 1.4e-11 74.3 118 35.6
Ca_07170_v3 Cicer arietinum L. HOM05D004028 ORTHO05D004844 1.4e-11 74.3 149 31.5
Lj3g0027440 Lotus japonicus HOM05D004028 ORTHO05D004844 1.4e-11 74.3 156 31.4
Nn8g39324 Nelumbo nucifera HOM05D004028 ORTHO05D004844 1.4e-11 74.3 157 31.8
Sc12g0009060 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.4e-11 74.3 150 32.0
CAN.G438.98 Capsicum annuum HOM05D004028 ORTHO05D004844 1.8e-11 73.9 154 34.4
TAR636G0621 Trochodendron aralioides HOM05D004028 ORTHO05D004844 3.0e-11 73.2 112 40.2
MSTRG.11103 Avicennia marina HOM05D004028 ORTHO05D004844 6.7e-11 72.0 108 38.0
Cfa002035 Carpinus fangiana HOM05D004028 ORTHO05D004844 6.7e-11 72.0 146 35.6
Nitab4.5_0000410g0330 Nicotiana tabacum HOM05D004028 ORTHO05D004844 8.8e-11 71.6 145 33.8
Nitab4.5_0003751g0020 Nicotiana tabacum HOM05D004028 ORTHO05D004844 2.0e-10 70.5 146 33.6
Sabra01G0136900 Salix brachista HOM05D004028 ORTHO05D004844 2.0e-10 70.5 142 29.6
Solyc03g119920.1 Solanum lycopersicum HOM05D004028 ORTHO05D004844 2.0e-10 70.5 154 33.1
Sopen03g038800 Solanum pennellii HOM05D004028 ORTHO05D004844 2.0e-10 70.5 154 33.1
TWI12G0252 Tripterygium wilfordii HOM05D004028 ORTHO05D004844 2.0e-10 70.5 112 35.7
PGSC0003DMG400005615 Solanum tuberosum HOM05D004028 ORTHO05D004844 2.6e-10 70.1 173 30.1
arahy.Tifrunner.gnm1.ann1.09PUMV Arachis hypogaea HOM05D004028 ORTHO05D004844 3.3e-10 69.7 146 31.5
Os07g0580700 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 3.3e-10 69.7 111 38.7
Thecc.09G118100 Theobroma cacao HOM05D004028 ORTHO05D004844 3.3e-10 69.7 98 38.8
CSS0044472 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 4.4e-10 69.3 119 32.8
SalBow2G1023 Salvia bowleyana HOM05D004028 ORTHO05D004844 4.4e-10 69.3 139 33.8
Dinv30549 Davidia involucrata HOM05D004028 ORTHO05D004844 5.7e-10 68.9 120 35.8
Haze_16483 Corylus avellana HOM05D004028 ORTHO05D004844 7.5e-10 68.6 146 32.2
Duzib235G0948 Durio zibethinus HOM05D004028 ORTHO05D004844 7.5e-10 68.6 120 30.0
MELO3C023384.2 Cucumis melo HOM05D004028 ORTHO05D004844 9.7e-10 68.2 122 35.2
Peaxi162Scf00015g00059 Petunia axillaris HOM05D004028 ORTHO05D004844 9.7e-10 68.2 129 34.1
QL05p026783 Quercus lobata HOM05D004028 ORTHO05D004844 1.3e-09 67.8 133 31.6
PGR004G0126 Punica granatum HOM05D004028 ORTHO05D004844 1.7e-09 67.4 116 34.5
Glyma.07G033400 Glycine max HOM05D004028 ORTHO05D004844 2.2e-09 67.0 148 33.1
DCAR_016247 Daucus carota HOM05D004028 ORTHO05D004844 2.8e-09 66.6 118 35.6
ClCG09G002500 Citrullus lanatus HOM05D004028 ORTHO05D004844 3.7e-09 66.2 122 35.2
Potri.001G175600 Populus trichocarpa HOM05D004028 ORTHO05D004844 3.7e-09 66.2 142 29.6
Sed0005418 Sechium edule HOM05D004028 ORTHO05D004844 3.7e-09 66.2 110 35.5
Rhsim08G0217900 Rhododendron simsii HOM05D000103 ORTHO05D000049 4.8e-09 65.9 161 32.9
EL10Ac9g21967 Beta vulgaris HOM05D004028 ORTHO05D004844 6.3e-09 65.5 152 30.3
AUR62016304 Chenopodium quinoa HOM05D004028 ORTHO05D004844 6.3e-09 65.5 126 32.5
Migut.I00818 Erythranthe guttata HOM05D004028 ORTHO05D004844 6.3e-09 65.5 77 40.3
AUR62011595 Chenopodium quinoa HOM05D004028 ORTHO05D004844 8.2e-09 65.1 174 28.2
Dinv38074 Davidia involucrata HOM05D004028 ORTHO05D004844 1.4e-08 64.3 136 29.4
Lalb_Chr04g0262561 Lupinus albus HOM05D004028 ORTHO05D004844 1.4e-08 64.3 145 32.4
TPR.G40708 Trifolium pratense HOM05D004028 ORTHO05D004844 1.8e-08 63.9 124 30.6
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 2.4e-08 63.5 82 35.4
CsaV3_7G032830 Cucumis sativus L. HOM05D004028 ORTHO05D004844 2.4e-08 63.5 121 33.1
Manes.04G119500 Manihot esculenta HOM05D004028 ORTHO05D004844 2.4e-08 63.5 144 30.6
HPP92_021805 Vanilla planifolia HOM05D004028 ORTHO05D004844 2.4e-08 63.5 138 28.3
CDE02G1484 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 5.3e-08 62.4 79 36.7
Glyma.08G208600 Glycine max HOM05D004028 ORTHO05D004844 5.3e-08 62.4 146 29.5
FAN02G4155 Fragaria x ananassa HOM05D004028 ORTHO05D004844 7.0e-08 62.0 143 30.1
Gohir.A10G078100 Gossypium hirsutum HOM05D004028 ORTHO05D004844 7.0e-08 62.0 107 30.8
Lj5C65T7 Lonicera japonica HOM05D004028 ORTHO05D004844 9.1e-08 61.6 108 35.2
Prupe.3G076900 Prunus persica HOM05D004028 ORTHO05D004844 9.1e-08 61.6 77 36.4
Thecc.06G077900 Theobroma cacao HOM05D004028 ORTHO05D004844 9.1e-08 61.6 78 35.9
FAN09G1065 Fragaria x ananassa HOM05D004028 ORTHO05D004844 1.2e-07 61.2 143 28.7
Oeu001148.1 Olea europaea HOM05D004028 ORTHO05D004844 1.2e-07 61.2 77 37.7
Oeu001149.3 Olea europaea HOM05D004028 ORTHO05D004844 1.2e-07 61.2 77 37.7
PGSC0003DMG400028640 Solanum tuberosum HOM05D004028 ORTHO05D004844 1.2e-07 61.2 80 38.8
COL.COLO4_12855 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.6e-07 60.8 116 27.6
COL.COLO4_34970 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.6e-07 60.8 81 42.0
RcHm_v2.0_Chr2g0137111 Rosa chinensis HOM05D004028 ORTHO05D004844 1.6e-07 60.8 77 36.4
Cpa.g.sc10.197 Carica papaya HOM05D004028 ORTHO05D004844 2.0e-07 60.5 109 32.1
MD17G1201100 Malus domestica HOM05D004028 ORTHO05D004844 2.0e-07 60.5 84 33.3
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 2.7e-07 60.1 77 40.3
Migut.I00821 Erythranthe guttata HOM05D004028 ORTHO05D004844 3.5e-07 59.7 115 35.7
FvH4_6g30720 Fragaria vesca HOM05D004028 ORTHO05D004844 3.5e-07 59.7 143 28.0
TAR636G0233 Trochodendron aralioides HOM05D004028 ORTHO05D004844 3.5e-07 59.7 80 35.0
DCAR_021324 Daucus carota HOM05D004028 ORTHO05D004844 4.5e-07 59.3 79 35.4
Migut.I00822 Erythranthe guttata HOM05D004028 ORTHO05D004844 4.5e-07 59.3 77 36.4
FAN05G3865 Fragaria x ananassa HOM05D004028 ORTHO05D004844 4.5e-07 59.3 143 29.4
FAN14G3012 Fragaria x ananassa HOM05D004028 ORTHO05D004844 4.5e-07 59.3 77 35.1
Os01g0176800 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 4.5e-07 59.3 77 39.0
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 5.9e-07 58.9 79 36.7
SEGI_28548 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 5.9e-07 58.9 79 36.7
Gohir.D10G073400 Gossypium hirsutum HOM05D004028 ORTHO05D004844 7.7e-07 58.5 78 35.9
Gorai.011G079300 Gossypium raimondii HOM05D004028 ORTHO05D004844 7.7e-07 58.5 78 35.9
Psat4g172640 Pisum sativum HOM05D004028 ORTHO05D004844 1.0e-06 58.2 77 35.1
TPR.G38588 Trifolium pratense HOM05D004028 ORTHO05D004844 1.0e-06 58.2 77 33.8
Eucgr.J03026 Eucalyptus grandis HOM05D004028 ORTHO05D004844 1.3e-06 57.8 77 36.4
CSS0013629 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 1.7e-06 57.4 72 38.9
Zm00001eb122530 Zea mays HOM05D004028 ORTHO05D004844 1.7e-06 57.4 77 37.7
ATR0083G044 Amborella trichopoda HOM05D004028 ORTHO05D004844 2.2e-06 57.0 155 30.3
vmacro18947 Vaccinium macrocarpon HOM05D004028 ORTHO05D004844 3.8e-06 56.2 135 28.1
CDE01G0290 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 5.0e-06 55.8 79 35.4
Ah.01g021130 Amaranthus hybridus HOM05D004028 ORTHO05D004844 8.5e-06 55.1 142 27.5


User provided reference genes

Program Settings