Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 5.0e-88 327.8 172 100.0
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 3.4e-76 288.5 172 85.5
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 1.7e-75 286.2 173 85.5
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 2.2e-75 285.8 172 84.3
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 3.7e-75 285.0 172 84.3
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 4.9e-75 284.6 172 84.3
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 6.4e-75 284.3 172 84.3
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 2.4e-74 282.3 172 83.1
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 5.4e-74 281.2 172 84.3
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 7.1e-74 280.8 173 83.8
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 1.6e-73 279.6 172 83.1
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 2.1e-73 279.3 172 83.1
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 6.0e-73 277.7 173 83.2
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 7.8e-73 277.3 172 83.1
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.0e-72 276.9 172 84.3
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 2.3e-72 275.8 173 83.2
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 2.3e-72 275.8 172 80.8
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 3.0e-72 275.4 172 84.3
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 3.0e-72 275.4 171 81.9
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 6.6e-72 274.2 174 81.0
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 3.3e-71 271.9 172 81.4
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 5.6e-71 271.2 173 82.1
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 1.2e-70 270.0 173 83.8
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 1.6e-70 269.6 172 80.8
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 2.1e-70 269.2 172 79.7
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 3.6e-70 268.5 172 79.7
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 3.6e-70 268.5 173 81.5
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 4.7e-70 268.1 173 78.6
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 6.2e-70 267.7 173 80.9
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 1.1e-69 266.9 172 79.1
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.1e-69 266.9 181 79.0
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 1.4e-69 266.5 174 78.7
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 4.0e-69 265.0 172 79.1
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 5.2e-69 264.6 174 77.0
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 5.2e-69 264.6 174 77.0
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 6.8e-69 264.2 172 77.9
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 6.8e-69 264.2 172 77.9
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 8.9e-69 263.8 172 78.5
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 1.2e-68 263.5 172 78.5
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 2.0e-68 262.7 172 79.7
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 2.6e-68 262.3 172 77.9
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 4.4e-68 261.5 172 78.5
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 5.8e-68 261.2 172 77.3
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 1.3e-67 260.0 172 77.3
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 1.3e-67 260.0 169 79.3
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.7e-67 259.6 172 76.7
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 1.7e-67 259.6 172 77.3
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 3.8e-67 258.5 172 76.7
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 4.9e-67 258.1 180 73.9
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 4.9e-67 258.1 172 76.7
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.1e-66 256.9 172 78.5
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.1e-66 256.9 172 78.5
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 9.2e-66 253.8 172 76.7
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 9.2e-66 253.8 172 76.2
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 4.6e-65 251.5 193 69.9
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 4.6e-65 251.5 163 79.1
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 1.0e-64 250.4 172 75.6
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 3.9e-64 248.4 173 75.7
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 6.6e-64 247.7 173 75.1
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 6.6e-64 247.7 170 75.3
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 2.5e-63 245.7 173 75.1
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 4.3e-63 245.0 173 74.0
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 7.3e-63 244.2 173 74.6
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 7.3e-63 244.2 173 74.0
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 3.6e-62 241.9 173 74.6
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 3.6e-62 241.9 173 74.0
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 4.7e-62 241.5 149 83.9
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 6.2e-62 241.1 167 73.7
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 8.1e-62 240.7 173 73.4
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 1.1e-61 240.4 172 72.1
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 1.4e-61 240.0 150 80.7
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 1.8e-61 239.6 173 73.4
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 2.4e-61 239.2 173 74.0
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 4.0e-61 238.4 144 83.3
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 5.2e-61 238.0 173 72.3
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 4.4e-60 235.0 173 71.1
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 7.6e-60 234.2 150 81.3
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 1.7e-59 233.0 144 83.3
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.2e-57 226.9 142 82.4
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 2.7e-57 225.7 149 77.9
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 3.5e-57 225.3 144 79.2
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 1.0e-56 223.8 173 71.7
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 1.0e-56 223.8 144 79.9
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 1.5e-55 219.9 144 78.5
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.3e-54 216.9 172 66.3
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 2.1e-54 216.1 172 66.3
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 4.8e-54 214.9 172 68.6
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 1.8e-53 213.0 144 75.0
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 5.8e-52 208.0 165 61.8
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 2.9e-51 205.7 150 70.7
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 4.9e-51 204.9 155 68.4
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 2.4e-50 202.6 172 59.9
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 3.9e-48 195.3 165 60.6
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 6.7e-48 194.5 175 57.1
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 5.6e-47 191.4 172 61.6
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 1.4e-42 176.8 174 54.6
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 4.2e-42 175.3 144 67.4
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 2.1e-41 172.9 111 80.2
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.7e-41 172.6 120 75.8
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 2.8e-38 162.5 139 69.8
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 6.2e-38 161.4 113 77.0
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.8e-37 159.8 121 69.4
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 1.5e-36 156.8 123 69.1
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 1.3e-35 153.7 101 75.2
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 5.7e-31 138.3 99 72.7
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 1.8e-29 133.3 164 54.3
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 6.9e-29 131.3 89 75.3
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 5.9e-28 128.3 99 68.7
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 5.9e-28 128.3 109 66.1
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 2.9e-27 125.9 104 66.3
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 2.9e-27 125.9 120 60.8
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 6.5e-27 124.8 86 75.6
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 8.5e-27 124.4 136 55.9
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 3.2e-26 122.5 95 70.5
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 5.5e-26 121.7 159 42.1
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 2.7e-25 119.4 165 39.4
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 6.7e-24 114.8 177 40.7
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 2.8e-22 109.4 71 77.5
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 4.8e-22 108.6 86 72.1
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 5.9e-20 101.7 104 57.7
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 8.5e-19 97.8 115 51.3
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.0e-16 90.9 58 79.3
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 4.4e-15 85.5 57 71.9
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 8.2e-14 81.3 59 71.2
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 5.3e-13 78.6 86 51.2
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 2.0e-12 76.6 63 66.7
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 2.6e-12 76.3 51 76.5
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 4.2e-10 68.9 58 60.3
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 3.6e-09 65.9 47 72.3
BolC1t00423H Brassica oleracea HOM05D000123 ORTHO05D009958 2.2e-06 56.6 57 52.6


User provided reference genes

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