Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 7.7e-61 236.9 113 100.0
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.6e-21 106.3 114 46.5
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 2.7e-21 105.5 114 48.2
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.7e-20 102.8 101 51.5
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.0e-20 101.3 121 43.8
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 5.0e-20 101.3 121 43.8
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.2e-18 96.7 113 43.4
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.2e-18 96.7 113 43.4
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.6e-18 96.3 74 59.5
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 3.6e-18 95.1 105 46.7
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 3.6e-18 95.1 91 56.0
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 4.7e-18 94.7 57 70.2
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 6.2e-18 94.4 72 55.6
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.1e-17 93.6 66 60.6
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.4e-17 93.2 112 42.0
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.4e-17 93.2 60 66.7
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 1.8e-17 92.8 88 53.4
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 3.1e-17 92.0 100 47.0
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 2.0e-16 89.4 120 44.2
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 2.6e-16 89.0 98 43.9
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 3.4e-16 88.6 64 64.1
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.4e-16 88.6 96 46.9
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.4e-16 88.6 103 47.6
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 4.4e-16 88.2 58 67.2
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 5.8e-16 87.8 70 58.6
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 5.8e-16 87.8 103 44.7
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 7.5e-16 87.4 104 43.3
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 9.8e-16 87.0 106 45.3
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 9.8e-16 87.0 103 44.7
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.3e-15 86.7 96 46.9
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.3e-15 86.7 103 47.6
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 2.2e-15 85.9 99 40.4
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 4.9e-15 84.7 59 61.0
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 4.9e-15 84.7 99 45.5
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 4.9e-15 84.7 59 61.0
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 6.4e-15 84.3 64 65.6
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.1e-14 83.6 106 48.1
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.4e-14 83.2 92 47.8
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.9e-14 82.8 105 45.7
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 1.9e-14 82.8 48 72.9
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.9e-14 82.8 48 72.9
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 2.4e-14 82.4 111 44.1
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 2.4e-14 82.4 117 41.0
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 2.4e-14 82.4 73 52.1
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 3.2e-14 82.0 48 70.8
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 3.2e-14 82.0 95 46.3
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 4.1e-14 81.6 104 44.2
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 4.1e-14 81.6 49 69.4
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 4.1e-14 81.6 104 44.2
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 5.4e-14 81.3 69 55.1
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 5.4e-14 81.3 73 53.4
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 7.0e-14 80.9 86 48.8
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 7.0e-14 80.9 48 70.8
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 7.0e-14 80.9 104 44.2
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 7.0e-14 80.9 100 45.0
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 9.2e-14 80.5 103 39.8
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 9.2e-14 80.5 105 44.8
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 9.2e-14 80.5 104 45.2
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 9.2e-14 80.5 46 65.2
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 9.2e-14 80.5 70 52.9
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 1.2e-13 80.1 104 45.2
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 1.2e-13 80.1 104 45.2
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.6e-13 79.7 66 57.6
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 1.6e-13 79.7 87 43.7
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 2.7e-13 79.0 92 46.7
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 2.7e-13 79.0 113 40.7
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 2.7e-13 79.0 70 51.4
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 3.5e-13 78.6 98 44.9
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 4.6e-13 78.2 105 44.8
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 4.6e-13 78.2 105 44.8
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 4.6e-13 78.2 108 44.4
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 4.6e-13 78.2 95 41.1
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 6.0e-13 77.8 77 48.1
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 6.0e-13 77.8 48 64.6
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 6.0e-13 77.8 48 64.6
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 6.0e-13 77.8 48 64.6
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 6.0e-13 77.8 48 64.6
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 6.0e-13 77.8 48 64.6
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 6.0e-13 77.8 97 40.2
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 7.8e-13 77.4 56 51.8
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 7.8e-13 77.4 107 44.9
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 7.8e-13 77.4 88 44.3
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 7.8e-13 77.4 87 40.2
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 1.0e-12 77.0 103 40.8
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.0e-12 77.0 91 40.7
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 1.3e-12 76.6 107 43.9
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 1.7e-12 76.3 105 43.8
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.7e-12 76.3 49 67.3
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.7e-12 76.3 55 58.2
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 3.0e-12 75.5 106 43.4
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 3.0e-12 75.5 73 53.4
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 3.0e-12 75.5 49 65.3
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 3.0e-12 75.5 90 45.6
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 3.9e-12 75.1 48 66.7
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.9e-12 75.1 55 58.2
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 3.9e-12 75.1 77 45.5
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 5.0e-12 74.7 96 41.7
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 6.6e-12 74.3 101 40.6
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.1e-11 73.6 45 66.7
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.1e-11 73.6 87 47.1
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.5e-11 73.2 68 52.9
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 1.5e-11 73.2 90 46.7
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 1.9e-11 72.8 100 39.0
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 2.5e-11 72.4 98 40.8
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 2.5e-11 72.4 87 44.8
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 3.3e-11 72.0 67 47.8
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 4.3e-11 71.6 87 46.0
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 4.3e-11 71.6 52 61.5
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 7.3e-11 70.9 41 68.3
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 9.5e-11 70.5 45 60.0
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.6e-10 69.7 66 50.0
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 4.7e-10 68.2 55 54.5
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.1e-09 67.0 86 41.9
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 1.4e-09 66.6 87 40.2
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 2.3e-09 65.9 60 50.0
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 2.3e-09 65.9 57 49.1
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 3.1e-09 65.5 100 40.0
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.2e-09 64.7 80 42.5
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 5.2e-09 64.7 39 61.5
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 6.8e-09 64.3 101 40.6
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.2e-08 63.5 39 61.5
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 1.2e-08 63.5 48 52.1
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 2.6e-08 62.4 100 41.0
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 9.9e-08 60.5 41 56.1
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.3e-07 60.1 70 44.3
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.7e-07 59.7 39 56.4
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 8.3e-07 57.4 82 40.2
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 1.9e-06 56.2 53 50.9
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 9.2e-06 53.9 41 48.8


User provided reference genes

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